antiSMASH on Biowulf
antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes.
It integrates and cross-links with a large number of in silico secondary metabolite analysis tools that have been published earlier.
References:
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antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters.
Marnix H. Medema, Kai Blin, Peter Cimermancic, Victor de Jager, Piotr Zakrzewski, Michael A. Fischbach, Tilmann Weber, Rainer Breitling & Eriko Takano
Nucleic Acids Research (2011) doi: 10.1093/nar/gkr466
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antiSMASH 6.0: improving cluster detection and comparison capabilities.
Kai Blin, Simon Shaw, Alexander M Kloosterman, Zach Charlop-Powers, Gilles P van Weezel, Marnix H Medema, & Tilmann Weber
Nucleic Acids Research (2021) doi: 10.1093/nar/gkab335.
Documentation
Important Notes
- Module Name: antismash (see the modules page for more information)
- Multithreaded via the -c/--cpus argument.
As of version 6.1, the default is 128 cpus, so make sure to set this parameter to what you have allocated.
- This application produces HTML reports. You can use hpcdrive to view these reports on your local workstation.
- Environment variables set