Kidney Systems Biology Project
Epithelial Systems Biology Laboratory, NHLBI, Bethesda, MD
Renal Epithelial Transcriptome and Proteome Databases
This page provides links to transcriptomic and proteomic databases for the various renal tubule epithelia compiled from published papers. Please contact Mark Knepper (Epithelial Systems Biology Laboratory, NHLBI) at or go to KSBP for further information.
Transcriptome (RNA-seq)   General Proteomics
Transcriptomes of All Renal Tubule Segments (Rat)   IMCD Proteome Database
Glomerular Transcriptome (Rat)   IMCD Membrane Proteome Database
Protein Kinases along Nephron   mpkCCD Proteome Database
Secreted Proteins along Nephron   Inner Medullary Collecting Duct Proteome Database
7-Membrane-Spanning Receptors along Nephron    
Transcription Factors along Nephron   Phosphoproteomics
Transporters and Channels along Nephron  
Housekeeping Proteins along Nephron   IMCD Phosphoproteome Database
Index (Single Tubule RNA-seq)   Temporal iTRAQ Phosphoproteomic Database (TiPD)
  mpkCCD Phosphoproteome Database
Transcriptome (Affymetrix Arrays)   Collecting Duct Phosphoproteome Database
  Inner Medullary Collecting Duct Phosphotyrosinome
Proximal Tubule Database   IMCD Kinase Substrate Database
Thick Ascending Limb Database   mTAL Phosphoproteome Database
Inner Medullary Collecting Duct Database   Renal Cortical Membrane Phosphoproteome Database
mTAL Transcriptome Database    
Rat Proximal Tubule Transcriptome Database   Specialized Proteomics
mpkCCD Transcriptome Database    
IMCD Transcriptome Database   mpkCCD Nucleus Proteome Database (mNPD)
    mpkCCD Nuclear Phosphoproteome Database (mNPPD)
Meta Analysis   Protein Half Lives in mpkCCD Epithelial Cells
  Urinary Exosomal Proteome in Renal Transplantation
Portal for Vasopressin Regulation in Kidney   Renal Inner Medullary Carbamylation Database
Database of Osmoregulated Proteins (Mammalian)  
  Human Urinary Exosome Proteomics
Collaborative Data (Transcriptomic)  
  Urinary Exosome Protein Database
Mouse Nephron: SAGE Data (Cheval et al.)   Human Exosome Proteins in Renal Transplant Rejection
Transcriptome of Mouse Distal Tubule (de Baaij et al.)  
Mouse Renal Inner Medulla: Response to Vasopressin   Collaborative Data (Proteomic)
Vasopressin-Regulated Transcripts in mpkCCD: SAGE  
Mouse Podocyte mRNA Expression (Kann et al.)   Kidney and Epididymal V-ATPase-rich Cell Proteome
  Rat Proximal Convoluted Tubule Proteome - Acidosis
  Aldosterone Effects on Mouse Distal Tubule Proteome
  IMCD Phosphoproteome with Acute Lithium Treatment
  Mouse Glomerular Phosphoproteomic Database
  Rat Glomerular Phosphoproteomic Database
  Bovine Glomerular Phosphoproteomic Database
  Apical Proteome in Mouse mpkCCD Cells