NIH HPC News & Announcements
New Online Tutorial: A practical introduction to GATK 4 on Biowulf
Date: 02 June 2021 15:06:00
From: staff@HPC.NIH.GOV
In this self-paced online course, you will learn how to efficiently run
a GATK 4 workflow for germline variant discovery with whole genome
sequencing data from a trio. The aim is to show how to run the basic
tools in a single workflow efficiently and avoid the common pitfalls. We
use this case study and benchmark to give you an idea of parameter
settings on Biowulf for each GATK step. Spark based tools as well as
non-Spark tools are discussed.
Expected knowledge: basic knowledge of high performance computing and
bash scripting.
Link to the course: https://hpc.nih.gov/training/gatk_tutorial/
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