A notebook to display all the predictions with good inter-pae scores

%autosave 0

from analysis_pipeline.af2_3dmol import parse_results,parse_results_colour_chains

from analysis_pipeline.utils import display_pae_plots

P78344_and_P60842 with iptm: 0.837125301361084

P78344_and_P60842 PAE plots

display_pae_plots('./P78344_and_P60842',figsize=((50, 50)))

P78344_and_P60842 coloured by plddt

parse_results('./P78344_and_P60842')

 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_0.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_1.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_2.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_3.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_4.pdb

You appear to be running in JupyterLab (or JavaScript failed to load for some other reason). You need to install the 3dmol extension:
jupyter labextension install jupyterlab_3dmol

P78344_and_P60842 coloured by chains

parse_results_colour_chains('./P78344_and_P60842')

 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_0.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_1.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_2.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_3.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_4.pdb

You appear to be running in JupyterLab (or JavaScript failed to load for some other reason). You need to install the 3dmol extension:
jupyter labextension install jupyterlab_3dmol

P78344_and_Q7L2H7 with iptm: 0.8041684627532959

P78344_and_Q7L2H7 PAE plots

display_pae_plots('./P78344_and_Q7L2H7',figsize=((50, 50)))

P78344_and_Q7L2H7 coloured by plddt

parse_results('./P78344_and_Q7L2H7')

 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_0.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_1.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_2.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_3.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_4.pdb

You appear to be running in JupyterLab (or JavaScript failed to load for some other reason). You need to install the 3dmol extension:
jupyter labextension install jupyterlab_3dmol

P78344_and_Q7L2H7 coloured by chains

parse_results_colour_chains('./P78344_and_Q7L2H7')

 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_0.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_1.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_2.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_3.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q7L2H7/ranked_4.pdb

You appear to be running in JupyterLab (or JavaScript failed to load for some other reason). You need to install the 3dmol extension:
jupyter labextension install jupyterlab_3dmol

P78344_and_Q14240 with iptm: 0.7836441993713379

P78344_and_Q14240 PAE plots

display_pae_plots('./P78344_and_Q14240',figsize=((50, 50)))

P78344_and_Q14240 coloured by plddt

parse_results('./P78344_and_Q14240')

 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_0.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_1.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_2.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_3.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_4.pdb

You appear to be running in JupyterLab (or JavaScript failed to load for some other reason). You need to install the 3dmol extension:
jupyter labextension install jupyterlab_3dmol

P78344_and_Q14240 coloured by chains

parse_results_colour_chains('./P78344_and_Q14240')

 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_0.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_1.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_2.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_3.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_Q14240/ranked_4.pdb

You appear to be running in JupyterLab (or JavaScript failed to load for some other reason). You need to install the 3dmol extension:
jupyter labextension install jupyterlab_3dmol

P78344_and_P09132 with iptm: 0.6570712924003601

P78344_and_P09132 PAE plots

display_pae_plots('./P78344_and_P09132',figsize=((50, 50)))

P78344_and_P09132 coloured by plddt

parse_results('./P78344_and_P09132')

P78344_and_P09132 coloured by chains

parse_results_colour_chains('./P78344_and_P09132')

P78344_and_Q92901 with iptm: 0.6534261703491211

P78344_and_Q92901 PAE plots

display_pae_plots('./P78344_and_Q92901',figsize=((50, 50)))

P78344_and_Q92901 coloured by plddt

parse_results('./P78344_and_Q92901')

P78344_and_Q92901 coloured by chains

parse_results_colour_chains('./P78344_and_Q92901')

P78344_and_O76094 with iptm: 0.6210068464279175

P78344_and_O76094 PAE plots

display_pae_plots('./P78344_and_O76094',figsize=((50, 50)))

P78344_and_O76094 coloured by plddt

parse_results('./P78344_and_O76094')

P78344_and_O76094 coloured by chains

parse_results_colour_chains('./P78344_and_O76094')

P78344_and_P23588 with iptm: 0.3591434359550476

P78344_and_P23588 PAE plots

display_pae_plots('./P78344_and_P23588',figsize=((50, 50)))

P78344_and_P23588 coloured by plddt

parse_results('./P78344_and_P23588')

P78344_and_P23588 coloured by chains

parse_results_colour_chains('./P78344_and_P23588')