A notebook to display all the predictions with good inter-pae scores¶

In [ ]:
%autosave 0
In [25]:
from analysis_pipeline.af2_3dmol import parse_results,parse_results_colour_chains
In [26]:
from analysis_pipeline.utils import display_pae_plots

P78344_and_P60842 with iptm: 0.837125301361084¶

P78344_and_P60842 PAE plots¶

In [3]:
display_pae_plots('./P78344_and_P60842',figsize=((50, 50)))

P78344_and_P60842 coloured by plddt¶

In [4]:
parse_results('./P78344_and_P60842')

 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_0.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_1.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_2.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_3.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_4.pdb

You appear to be running in JupyterLab (or JavaScript failed to load for some other reason). You need to install the 3dmol extension:
jupyter labextension install jupyterlab_3dmol

P78344_and_P60842 coloured by chains¶

In [27]:
parse_results_colour_chains('./P78344_and_P60842')

 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_0.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_1.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_2.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_3.pdb
 ==> Parsing a PDB/mmCIF file: ./P78344_and_P60842/ranked_4.pdb

You appear to be running in JupyterLab (or JavaScript failed to load for some other reason). You need to install the 3dmol extension:
jupyter labextension install jupyterlab_3dmol