Scientific Databases
Blast
Blast v5 databases. For use via command-line Blast or easyblast on Biowulf| Database | Location on HPC systems | Last Updated
| Betacoronavirus | Blast v5 database: Betacoronavirus nucleotide sequence data /fdb/blastdb/Betacoronavirus | 06 May 2020 |
(Updated weekly) Source: ftp.ncbi.nlm.nih.gov Human Genome GRCh38.p13 | Genome Reference Consortium Human Build 38 Patch Release 13 (2019/02/28). /fdb/blastdb/GRCh38.p13 | 12 Feb 2020 |
(Updated one-time) Source: ftp.ncbi.nlm.nih.gov Human Genome GRCh38.p13 proteins | Genome Reference Consortium Human Build 38 Patch Release 13 (2019/02/28) proteins /fdb/blastdb/GRCh38.p13.prot | 12 Feb 2020 |
(Updated one-time) Source: ftp.ncbi.nlm.nih.gov Mouse Genome GRCm38.p6 | Genome Reference Consortium Mouse Build 38 patch release 6 (2017/09/15) /fdb/blastdb/GRCm38.p6 | 12 Feb 2020 |
(Updated after new build release) Source: ftp.ncbi.nlm.nih.gov Mouse Genome GRCm38.p6 proteins | Genome Reference Consortium Mouse Build 38 patch release 6 (2017/09/15) proteins /fdb/blastdb/GRCm38.p6.prot | 12 Feb 2020 |
(Updated after release) Source: ftp.ncbi.nlm.nih.gov NCBI nr | NCBI nr v5 database for Blast 2.8.0+ onwards /fdb/blastdb/nr | 04 Mar 2020 |
(Updated weekly) Source: ftp.ncbi.nlm.nih.gov NCBI nt | NCBI nt v5 Blast database for Blast 2.8.0+ onwards /fdb/blastdb/nt | 03 Mar 2020 |
(Updated weekly) Source: ftp.ncbi.nlm.nih.gov Protein Data Bank | Blast 5 database: Protein sequences of experimentally determined 3D structures of biological macromolecules. More information at the PDB. /fdb/blastdb/pdbaa | 04 Mar 2020 |
(Updated weekly) Source: ftp.ncbi.nlm.nih.gov Protein Data Bank | Blast v5 database: Nucleotide sequences of experimentally determined 3D structures of biological macromolecules. More information at the PDB. /fdb/blastdb/pdbnt | 07 Dec 2019 |
(Updated weekly) Source: ftp.ncbi.nlm.nih.gov SwissProt | Swissprot Blast v5 database for Blast 2.8.0+ onwards /fdb/blastdb/swissprot | 04 Mar 2020 | (Updated weekly) Source: ftp.ncbi.nlm.nih.gov |