Biowulf High Performance Computing at the NIH
Scientific Databases

Blast

Blast v5 databases. For use via command-line Blast or easyblast on Biowulf
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Database Location on HPC systemsLast Updated
Betacoronavirus
Blast v5 database: Betacoronavirus nucleotide sequence data
/fdb/blastdb/Betacoronavirus 06 May 2020
(Updated weekly)
Source: ftp.ncbi.nlm.nih.gov
Human Genome GRCh38.p13
Genome Reference Consortium Human Build 38 Patch Release 13 (2019/02/28).
/fdb/blastdb/GRCh38.p13 12 Feb 2020
(Updated one-time)
Source: ftp.ncbi.nlm.nih.gov
Human Genome GRCh38.p13 proteins
Genome Reference Consortium Human Build 38 Patch Release 13 (2019/02/28) proteins
/fdb/blastdb/GRCh38.p13.prot 12 Feb 2020
(Updated one-time)
Source: ftp.ncbi.nlm.nih.gov
Mouse Genome GRCm38.p6
Genome Reference Consortium Mouse Build 38 patch release 6 (2017/09/15)
/fdb/blastdb/GRCm38.p6 12 Feb 2020
(Updated after new build release)
Source: ftp.ncbi.nlm.nih.gov
Mouse Genome GRCm38.p6 proteins
Genome Reference Consortium Mouse Build 38 patch release 6 (2017/09/15) proteins
/fdb/blastdb/GRCm38.p6.prot 12 Feb 2020
(Updated after release)
Source: ftp.ncbi.nlm.nih.gov
NCBI nr
NCBI nr v5 database for Blast 2.8.0+ onwards
/fdb/blastdb/nr 04 Mar 2020
(Updated weekly)
Source: ftp.ncbi.nlm.nih.gov
NCBI nt
NCBI nt v5 Blast database for Blast 2.8.0+ onwards
/fdb/blastdb/nt 03 Mar 2020
(Updated weekly)
Source: ftp.ncbi.nlm.nih.gov
Protein Data Bank
Blast 5 database: Protein sequences of experimentally determined 3D structures of biological macromolecules. More information at the PDB.
/fdb/blastdb/pdbaa 04 Mar 2020
(Updated weekly)
Source: ftp.ncbi.nlm.nih.gov
Protein Data Bank
Blast v5 database: Nucleotide sequences of experimentally determined 3D structures of biological macromolecules. More information at the PDB.
/fdb/blastdb/pdbnt 07 Dec 2019
(Updated weekly)
Source: ftp.ncbi.nlm.nih.gov
SwissProt
Swissprot Blast v5 database for Blast 2.8.0+ onwards
/fdb/blastdb/swissprot 04 Mar 2020
(Updated weekly)
Source: ftp.ncbi.nlm.nih.gov

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