Scientific Databases
MySQL
Accessible through the HPC mirror of the UCSC Genome Browser. Also available for direct MySQL queries from the Biowulf cluster nodes.| Database | Location on HPC systems | Last Updated
| Chicken Genome (Gallus gallus) | May 2006 assembly from WUSTL. NIH mirror of UCSC Genome Browser | 30 Jun 2019 |
(Updated weekly) Source: hgdownload.cse.ucsc.edu Cow Genome (Bos Taurus) | Aug 2006 assembly from the Baylor Sequencing Center NIH mirror of UCSC genome browser | (Updated weekly) Source: hgdownload.cse.ucsc.edu Dog Genome (Canis familiaris) | May 2005 assembly from the Broad Institute NIH mirror of UCSC genome browser | 20 Oct 2019 |
(Updated weekly) Source: hgdownload.cse.ucsc.edu Drosophila genome (Drosophila melanogaster) fb5 | April 2006 assembly NIH mirror of UCSC genome browser | (Updated weekly) Source: hgdownload.cse.ucsc.edu Human Genome hg18 | Build 36, hg18 (Apr 2006) from the International Human Genome Consortium NIH mirror of UCSC Genome Browser | 30 Jun 2019 |
(Updated weekly) Source: genome.ucsc.edu Human Genome hg19 | Build 37, hg19 (Feb 2009) from the International Human Genome Consortium NIH mirror of UCSC Genome Browser | 30 Jun 2019 |
(Updated weekly) Source: genome.ucsc.edu IMPC | The International Mouse Phenotyping Consortium (IMPC) provides phenotype data for mice. /fdb/IMPC/IMPC_data_release_7.0.sql.gz | 03 Apr 2018 |
(Updated one-time) Source: www.mousephenotype.org Mouse Genome (Mus musculus) mm8 | Build 36, mm8, Mar 2006 from the Mouse Genome Consortium NIH mirror of UCSC Genome Browser | 16 Feb 2020 |
(Updated weekly) Source: genome-ftp.cse.ucsc.edu Mouse Genome (Mus musculus) mm9 | Build 37, mm9, Jul 2007 from the Mouse Genome Consortium NIH mirror of UCSC Genome Browser | 16 Feb 2020 |
(Updated weekly) Source: genome-ftp.cse.ucsc.edu Rat Genome (Rattus norvegicus) rn3 | June 2003 build, rn3, from the Rat Genome Sequencing Consortium NIH mirror of UCSC Genome Browser | (Updated weekly) Source: genome.ucsc.edu Rat Genome (Rattus norvegicus) rn4 | May 2006 build, rn4, from the Rat Genome Sequencing Consortium NIH mirror of UCSC Genome Browser | 04 Aug 2019 |
(Updated weekly) Source: genome.ucsc.edu Rat Genome (Rattus norvegicus) rn5 | March 2012 build, rn5, from the Rat Genome Sequencing Consortium NIH mirror of UCSC Genome Browser | 22 Dec 2019 |
(Updated weekly) Source: genome.ucsc.edu Rhesus genome rheMac2 | Jan 2006 assembly from the Baylor Sequencing Center. NIH mirror of UCSC genome browser | 30 Jun 2019 |
(Updated weekly) Source: hgdownload.cse.ucsc.edu Zebrafish genome (Danio Rerio) | Mar 2006 assembly from the Sanger Center. NIH mirror of UCSC genome browser | (Updated weekly) Source: hgdownload.cse.ucsc.edu |