Biowulf High Performance Computing at the NIH
Scientific Databases

MySQL

Accessible through the HPC mirror of the UCSC Genome Browser. Also available for direct MySQL queries from the Biowulf cluster nodes.
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Database Location on HPC systemsLast Updated
Chicken Genome (Gallus gallus)
May 2006 assembly from WUSTL.
NIH mirror of UCSC Genome Browser 07 Sep 2018
(Updated weekly)
Source: hgdownload.cse.ucsc.edu
Cow Genome (Bos Taurus)
Aug 2006 assembly from the Baylor Sequencing Center
NIH mirror of UCSC genome browser 31 Jan 2012
(Updated weekly)
Source: hgdownload.cse.ucsc.edu
Dog Genome (Canis familiaris)
May 2005 assembly from the Broad Institute
NIH mirror of UCSC genome browser 14 Dec 2018
(Updated weekly)
Source: hgdownload.cse.ucsc.edu
Drosophila genome (Drosophila melanogaster) fb5
April 2006 assembly
NIH mirror of UCSC genome browser 30 Nov 2018
(Updated weekly)
Source: hgdownload.cse.ucsc.edu
Human Genome hg18
Build 36, hg18 (Apr 2006) from the International Human Genome Consortium
NIH mirror of UCSC Genome Browser 14 Dec 2018
(Updated weekly)
Source: genome.ucsc.edu
Human Genome hg19
Build 37, hg19 (Feb 2009) from the International Human Genome Consortium
NIH mirror of UCSC Genome Browser 14 Dec 2018
(Updated weekly)
Source: genome.ucsc.edu
IMPC
The International Mouse Phenotyping Consortium (IMPC) provides phenotype data for mice.
/fdb/IMPC/IMPC_data_release_7.0.sql.gz 03 Apr 2018
(Updated one-time)
Source: www.mousephenotype.org
Mouse Genome (Mus musculus) mm8
Build 36, mm8, Mar 2006 from the Mouse Genome Consortium
NIH mirror of UCSC Genome Browser 14 Dec 2018
(Updated weekly)
Source: genome-ftp.cse.ucsc.edu
Mouse Genome (Mus musculus) mm9
Build 37, mm9, Jul 2007 from the Mouse Genome Consortium
NIH mirror of UCSC Genome Browser 14 Dec 2018
(Updated weekly)
Source: genome-ftp.cse.ucsc.edu
Rat Genome (Rattus norvegicus) rn3
June 2003 build, rn3, from the Rat Genome Sequencing Consortium
NIH mirror of UCSC Genome Browser 09 Oct 2015
(Updated weekly)
Source: genome.ucsc.edu
Rat Genome (Rattus norvegicus) rn4
May 2006 build, rn4, from the Rat Genome Sequencing Consortium
NIH mirror of UCSC Genome Browser 14 Dec 2018
(Updated weekly)
Source: genome.ucsc.edu
Rat Genome (Rattus norvegicus) rn5
March 2012 build, rn5, from the Rat Genome Sequencing Consortium
NIH mirror of UCSC Genome Browser 14 Dec 2018
(Updated weekly)
Source: genome.ucsc.edu
Rhesus genome rheMac2
Jan 2006 assembly from the Baylor Sequencing Center.
NIH mirror of UCSC genome browser 14 Dec 2018
(Updated weekly)
Source: hgdownload.cse.ucsc.edu
Zebrafish genome (Danio Rerio)
Mar 2006 assembly from the Sanger Center.
NIH mirror of UCSC genome browser 29 Nov 2011
(Updated weekly)
Source: hgdownload.cse.ucsc.edu

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