Biowulf High Performance Computing at the NIH
Scientific Databases

Novoalign indexes

Indexes for the Novoalign aligner for single-ended and paired-end reads from the Illumina Genome Analyser
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Database Location on HPC systemsLast Updated
Drosophila genome (Drosophila melanogaster) fb5
April 2006 assembly
/fdb/novoalign/d_mel_5_30.nix 20 May 2011
(Updated one-time)
Source: Built using novoindex from /fdb/novoalign/d_mel_5_30.fa
Fission yeast genome (S. pombe)
Jul-2009 assembly
/fdb/novoalign/s_pombe_2.nix 25 Mar 2011
(Updated one-time)
Source: Built using novoindex from /fdb/novoalign/s_pombe.fa
Human Genome hg18
Build 36, hg18 (Apr 2006) from the International Human Genome Consortium
/fdb/novoalign/chr_all_hg18.nix 27 Sep 2010
(Updated one-time)
Source: built using novoindex from/fdb/genome/hg18/chr_all.fa
Human Genome hg19
Build 37, hg19 (Feb 2009) from the International Human Genome Consortium
/fdb/novoalign/chr_all_hg19.nbx 12 Jan 2012
(Updated one-time)
Source: built using novoindex from/fdb/genome/hg19/chr_all.fa
Mouse Genome (Mus musculus) mm10
mm10, GRC Build 38
/fdb/novoalign/chr_all_mm10.nix 26 Aug 2013
(Updated one-time)
Source: Built using novoindex from /fdb/genome/mm10/chr_all.fa
Mouse Genome (Mus musculus) mm9
Build 37, mm9, Jul 2007 from the Mouse Genome Consortium
/fdb/novoalign/chr_all_mm9.nix 26 Aug 2013
(Updated one-time)
Source: Built using novoindex from /fdb/genome/mm9/chr_all.fa

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