Biowulf High Performance Computing at the NIH
Scientific Databases

1000 Genomes

RNA-seq BAM files from Geuvadis experiment
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Description Format Location on HPC systems Last Updated
RNA-seq BAM files from Geuvadis experimentBAM
Binary SAM files
/fdb/1000genomes/ftp/E-GEUV-1 =
(Updated occasionally)
Source: www.geuvadis.org
20100804 release containing analysis results sets (vcfs) and README files. BAM
Binary SAM files
/fdb/1000genomes/ftp/data/ 05 Dec 2017
(Updated occasionally)
Source: ftp.ncbi.nlm.nih.gov
1,000 Genomes haplotypes -- integrated variant set releaseImpute2
Reference data for the Impute program for genotype imputation and haplotype phasing
/fdb/impute2 29 Apr 2015
(Updated occasionally)
Source: mathgen.stats.ox.ac.uk
1000 genomes data for minimac genotype imputationminimac
1000 genomes data for minimac genotype imputation
/fdb/minimac 21 Apr 2015
(Updated one-time)
Source: csg.sph.umich.edu
20100804 release containing analysis results sets (vcfs) and README files. VCF
Variant Call Format for genomic data
/fdb/1000genomes/ 16 Nov 2017
(Updated occasionally)
Source: ftp.ncbi.nlm.nih.gov

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