Biowulf High Performance Computing at the NIH
Scientific Databases

Human Genome GRCh38

Sep 2013 assembly of human genome. See info at NCBI
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Description Format Location on HPC systems Last Updated
Sep 2013 assembly of human genome. See info at NCBIFasta
Fasta-format flatfile databases used by Fasta, Blat and other programs.
/fdb/ensembl/pub/release-77/fasta/homo_sapiens 31 May 2016
(Updated one-time)
Source: ftp.ensembl.org
GRCh38.p2 is the second patch release for the GRCh38 reference assembly from the Genome Reference Consortium. Release date December 8, 2014. More info at GRC site.Fasta
Fasta-format flatfile databases used by Fasta, Blat and other programs.
/fdb/genome/GRCh38.p2/ 13 Apr 2015
(Updated one-time)
Source: ftp.ncbi.nlm.nih.gov
Collection of fasta, GFF/GTF, and metadata for GRCh38.GENCODE
The GENCODE Project: Encyclopaedia of genes and gene variants.
/fdb/GENCODE/Gencode_human 09 Mar 2015
(Updated occasionally)
Source: ftp.sanger.ac.uk
Sep 2013 assembly of human genome.VEP data
For use by the VEP program.
/fdb/VEP/81/cache/homo_sapiens/81_GRCh38 29 Aug 2017
(Updated upon app update)
Source: ftp.ensembl.org

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