Scientific Databases
Human Genome GRCh38
Sep 2013 assembly of human genome. See info at NCBI| Description | Format | Location on HPC systems | Last Updated |
| Sep 2013 assembly of human genome. See info at NCBI | Fasta Fasta-format flatfile databases used by Fasta, Blat and other programs. | /fdb/ensembl/pub/release-77/fasta/homo_sapiens | 31 May 2016 (Updated one-time) Source: ftp.ensembl.org |
| GRCh38.p2 is the second patch release for the GRCh38 reference assembly from the Genome Reference Consortium. Release date December 8, 2014. More info at GRC site. | Fasta Fasta-format flatfile databases used by Fasta, Blat and other programs. | /fdb/genome/GRCh38.p2/ | 13 Apr 2015 (Updated one-time) Source: ftp.ncbi.nlm.nih.gov |
| Collection of fasta, GFF/GTF, and metadata for GRCh38. | GENCODE The GENCODE Project: Encyclopaedia of genes and gene variants. | /fdb/GENCODE/Gencode_human | 09 Mar 2015 (Updated occasionally) Source: ftp.sanger.ac.uk |
| Sep 2013 assembly of human genome. | VEP data For use by the VEP program. | /fdb/VEP/81/cache/homo_sapiens/81_GRCh38 | 29 Aug 2017 (Updated upon app update) Source: ftp.ensembl.org |