Scientific Databases
Human Genome hg18
Build 36, hg18 (Apr 2006) from the International Human Genome Consortium| Description | Format | Location on HPC systems | Last Updated |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | .dict Sequence dictionary file produced by Picard CreateSequenceDictionary | /fdb/indexes/hg18/hg18.fa.dict | = (Updated one-time) Source: Built on Helix from /fdb/indexes/hg18/hg18.fa |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | .fai Fasta index file produced by samtools faidx | /fdb/indexes/hg18/hg18.fa.fai | = (Updated one-time) Source: Built on Helix from /fdb/indexes/hg18/hg18.fa |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | Bfast indexes For use by the Bfast program for fast and accurate mapping of short reads to reference sequences | /fdb/bfast | = (Updated one-time) Source: built using bfast index builder from /fdb/genome/hg18/chr_all.fa |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | Blast formatted for the NCBI Blast program. For use via command-line Blast on HPC systems. | /fdb/genome/hg18 | = (Updated one-time) Source: genome-ftp.cse.ucsc.edu |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | defuse data Data used by the deFuse program for gene fusion discovery using RNA-Seq data | /fdb/defuse/hg18 | = (Updated one-time) Source: hgdownload.cse.ucsc.edu |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | Fasta Fasta-format flatfile databases used by Fasta, Blat and other programs. | /fdb/genome/hg18/ | = (Updated one-time) Source: genome-ftp.cse.ucsc.edu |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | GATK resource bundle Standard data set for working with GATK | /fdb/GATK_resource_bundle/hg18 | = (Updated After new release; currently at Version 2.8) Source: gsapubftp-anonymous@ftp.broadinstitute.org |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | Igenomes Illumina's Igenomes are a collection of reference sequences and annotation files for commonly analyzed organisms. More info at Illumina | /fdb/igenomes/Homo_Sapiens | = (Updated one-time) Source: support.illumina.com |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | MySQL Accessible through the HPC mirror of the UCSC Genome Browser. Also available for direct MySQL queries from the Biowulf cluster nodes. | NIH mirror of UCSC Genome Browser | 05 May 2019 (Updated weekly) Source: genome.ucsc.edu |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | Novoalign indexes Indexes for the Novoalign aligner for single-ended and paired-end reads from the Illumina Genome Analyser | /fdb/novoalign/chr_all_hg18.nix | = (Updated one-time) Source: built using novoindex from/fdb/genome/hg18/chr_all.fa |
| Build 36, hg18 (Apr 2006) from the International Human Genome Consortium | plinkseq data Data used by plinkseq, a library for working with human genetic variation data. | /fdb/plinkseq/hg18 | = (Updated one-time) Source: |