Biowulf High Performance Computing at the NIH
Scientific Databases

Rat Genome Data

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Description Format Location on HPC systems Last Updated
March 2012 build, rn5, from the Rat Genome Sequencing ConsortiumMySQL
Accessible through the HPC mirror of the UCSC Genome Browser. Also available for direct MySQL queries from the Biowulf cluster nodes.
NIH mirror of UCSC Genome Browser 2019-12-22 19:00:46
(Updated weekly)
Source: genome.ucsc.edu
May 2006 build, rn4, from the Rat Genome Sequencing ConsortiumMySQL
Accessible through the HPC mirror of the UCSC Genome Browser. Also available for direct MySQL queries from the Biowulf cluster nodes.
NIH mirror of UCSC Genome Browser 2019-08-04 19:00:23
(Updated weekly)
Source: genome.ucsc.edu
May 2006 build, rn4, from the Rat Genome Sequencing ConsortiumIgenomes
Illumina's Igenomes are a collection of reference sequences and annotation files for commonly analyzed organisms. More info at Illumina
/fdb/igenomes/Rattus_norvegicus 2014-02-03 13:03:22
(Updated one-time)
Source: support.illumina.com
March 2012 build, rn5, from the Rat Genome Sequencing ConsortiumIgenomes
Illumina's Igenomes are a collection of reference sequences and annotation files for commonly analyzed organisms. More info at Illumina
/fdb/igenomes/Rattus_norvegicus 2014-02-03 13:03:22
(Updated one-time)
Source: support.illumina.com
March 2012 build, rn5, from the Rat Genome Sequencing ConsortiumFasta (MySQL)
Fasta-format flatfile databases used by Fasta, Blat and other programs.
/fdb/genome/rn5 2013-01-07 13:55:30
(Updated one-time)
Source: genome-ftp.cse.ucsc.edu
June 2003 build, rn3, from the Rat Genome Sequencing ConsortiumMySQL
Accessible through the HPC mirror of the UCSC Genome Browser. Also available for direct MySQL queries from the Biowulf cluster nodes.
NIH mirror of UCSC Genome Browser 0000-00-00 00:00:00
(Updated weekly)
Source: genome.ucsc.edu

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