Biowulf High Performance Computing at the NIH
Scientific Databases

Zebrafish Genome Data

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Description Format Location on HPC systems Last Updated
Mar 2006 assembly from the Sanger Center. Fasta
Fasta-format flatfile databases used by Fasta, Blat and other programs.
/fdb/genome/Zv10 2014-10-16 09:45:14
(Updated one-time)
Source: ftp.ncbi.nlm.nih.gov
Igenomes
Illumina's Igenomes are a collection of reference sequences and annotation files for commonly analyzed organisms. More info at Illumina
/fdb/igenomes/Danio_rerio 2014-05-05 18:32:30
(Updated one-time)
Source: support.illumina.com
Mar 2006 assembly from the Sanger Center. MySQL
Accessible through the HPC mirror of the UCSC Genome Browser. Also available for direct MySQL queries from the Biowulf cluster nodes.
NIH mirror of UCSC genome browser 0000-00-00 00:00:00
(Updated weekly)
Source: hgdownload.cse.ucsc.edu

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