Description

References:

• Keikhosravi A. HiTIPS: High-Throughput Image Processing Software for the Study of Nuclear Architecture and Gene Expression. bioRxiv 2023.11.02.565366.

• HiTIPS’s documentation

This application requires a graphical connection using NX

• Module Name: hitips (see the modules page for more information)
• HiTIPS needs to run with interactive session (example in next section), GUI could be opened after loading the module:

  [user@cn#### ~]$ module load hitips
  [user@cn#### ~]$ hitips &
  

• HiTIPS testing data is shared uder /fdb/app_testdata/image_files/S-BIAD1043/

Allocate an interactive session and run the program.
Sample session (user input in bold):

[user@biowulf]$ sinteractive --gres=lscratch:100,gpu:p100:1 --mem=30g
salloc: Pending job allocation 21973742
salloc: job 21973742 queued and waiting for resources
salloc: job 21973742 has been allocated resources
salloc: Granted job allocation 21973742
salloc: Waiting for resource configuration
salloc: Nodes cn2358 are ready for job
[user@cn2358 ~]$ module load hitips

[user@cn2358 ~]$ hitips 

After analysis is finished, exit interactive session:

[user@cn2358 ~]$ exit 
salloc.exe: Relinquishing job allocation 21973742
[user@biowulf ~]$