LAFTER is a local filter for single particle TEM reconstructions

• LAFTER Main Site

• Module Name: lafter (see the modules page for more information)
• Multithreaded

Allocate an interactive session and run the program.
Sample session (user input in bold):

[user@biowulf]$ sinteractive
salloc.exe: Pending job allocation 46116226
salloc.exe: job 46116226 queued and waiting for resources
salloc.exe: job 46116226 has been allocated resources
salloc.exe: Granted job allocation 46116226
salloc.exe: Waiting for resource configuration
salloc.exe: Nodes cn3144 are ready for job

[user@cn3144 ~]$ module load lafter

[user@cn3144 ~]$ lafter --v1 half_map1.mrc --v2 half_map2.mrc

[user@cn3144 ~]$ exit
salloc.exe: Relinquishing job allocation 46116226
[user@biowulf ~]$

Create a batch input file (e.g. lafter.sh). For example:

#!/bin/bash
set -e
module load lafter
lafter --v1 half_map1.mrc --v2 half_map2.mrc

Submit this job using the Slurm sbatch command.

sbatch [--cpus-per-task=#] [--mem=#] lafter.sh