Biowulf High Performance Computing at the NIH
RNAVIEW on Biowulf
The RNAView program generates 2-dimensional displays of RNA/DNA secondary structures with tertiary interactions. RNAView automatically identifies and classifies the types of base pairs that are formed in nucleic acid structures, fully implementing Leontis and Westhof's ( RNA (2001) 7, 499-512), convention for edge-to-edge hydrogen bonding interactions.

Documentation

http://ndbserver.rutgers.edu/ndbmodule/services/download/rnaview.html

Important Notes
Submitting an interactive job

Allocate an interactive session and run the interactive job there.

[biowulf]$ sinteractive
salloc.exe: Granted job allocation 789523
salloc.exe: Waiting for resource configuration
salloc.exe: Nodes cn0135 are ready for job

[cn0135]$ cd /data/$USER/

[cn0135]$ module load rnaview

[cn0135]$ rnaview file.pdf

[cn0135]$ exit
salloc.exe: Job allocation 789523 has been revoked.

[biowulf]$