Sib-pair is a program for the manipulation and statistical analysis of genetic datasets. It implements a variety of analyses that can be applied to non-genetic data, such as generalized linear mixed models, multivariate survival analysis, log-linear modelling, conditional logistic regression, principal components analysis, polychoric and distance correlations, and many mathematical distributions, eg multivariate normal, quadratic form of normals.

• SIB-PAIR Main Site

• Module Name: sib-pair (see the modules page for more information)
• Environment variables set
  • SIBPAIR_HOME

Allocate an interactive session and run the program.
Sample session (user input in bold):

[user@biowulf]$ sinteractive
salloc.exe: Pending job allocation 46116226
salloc.exe: job 46116226 queued and waiting for resources
salloc.exe: job 46116226 has been allocated resources
salloc.exe: Granted job allocation 46116226
salloc.exe: Waiting for resource configuration
salloc.exe: Nodes cn3144 are ready for job

[user@cn3144 ~]$ module load sib-pair

[user@cn3144 ~]$ echo 'help Examples; quit' | sib-pair

[user@cn3144 ~]$ exit
salloc.exe: Relinquishing job allocation 46116226
[user@biowulf ~]$

Create a batch input file (e.g. sib-pair.sh). For example:

#!/bin/bash
set -e
module load sib-pair

echo 'help Examples; quit' | sib-pair

Submit this job using the Slurm sbatch command.

sbatch [--cpus-per-task=#] [--mem=#] sib-pair.sh