SVSolver on Biowulf

SVSolver provides access to svMultiPhysics, an open-source, parallel finite-element solver for computational fluid dynamics and multiphysics simulations. It can model blood flow and other fluid systems, including coupled interactions between fluids and solid structures, and supports distributed computing with MPI.

Documentation
Important Notes

Batch job
Most jobs should be run as batch jobs.

Create a batch input file (e.g. svsolver.sh) similar to the following.

#!/bin/bash
#SBATCH --nodes=2
#SBATCH --ntasks-per-core=1
#SBATCH --ntasks=16
#SBATCH --partition=multinode
#SBATCH --constraint=x2680
#SBATCH --mem=4g

cd /data/$USER/SVProject/Simulations/demojob
module load svsolver

ulimit -l unlimited

mpirun -np $SLURM_NTASKS svsolver

Submit these jobs using the Slurm sbatch command.

sbatch svsolver.sh