Biowulf High Performance Computing at the NIH
Mascot Databases

Name Description
Last update
Size
(MB)
Bindu_HbPrivate database2017-01-10 12
bsaPrivate database2012-09-06 0
CMD_PARPPrivate database2016-05-31 0
contaminants_YWPrivate database2021-01-08 0
HomosapiensSP_cRAPPrivate database2013-01-18 12
Hs.Pf24.VSA.JR27Private database2017-03-03 27
HS.PFA.17Dec2012Private database2012-12-20 18
MSDBA nonredundant protein sequence database designed specifically for mass-spec applications. 2010-06-01
Download fasta file
1290
MusculusSP_cRAPPrivate database2018-07-26 10
NCBIprotThe equivalent of NCBInr, except without GI accession numbers. Updated monthly. 2021-01-17
Download fasta file
162031
NCBIprot_cowSubset of NCBIprot containing only cow sequences, and without GI accession 2021-01-18
Download fasta file
54
NCBIprot_humanSubset of NCBIprot containing only human sequences, and without GI accession 2021-01-18
Download fasta file
189
NCBIprot_mouseSubset of NCBIprot containing only mouse sequences, and without GI accession 2021-01-18
Download fasta file
107
NCBIprot_pigSubset of NCBIprot containing only pig sequences, and without GI accession 2021-01-18
Download fasta file
40
NCBIprot_ratSubset of NCBIprot containing only rat sequences, and without GI accession 2021-01-18
Download fasta file
54
NPM_AllenPlace_2019-01-07Private database2019-01-08 0
NPM_MouseNPrivate database2018-07-26 44
NPM_OsS1PPrivate database2019-04-05 0
Orsburn7Private database2012-12-20 18
Pc_marinaPrivate database2020-09-18 2
PRIDE_ContaminantsA collection of common contaminant spectra from EBI. Updated weekly. 2018-07-19
Download fasta file
50
psfrefPrivate database2020-12-03 6
Psfref_OctopusPrivate database2017-07-07 31
psfref_PM_MH_Squid_DrosophilaPrivate database2019-11-21 10
psfref_SC-peptidePrivate database2017-05-01 0
Psfref_SquidPrivate database2020-10-08 11
psfref_tubPrivate database2019-06-18 0
Py_mouse_spPrivate database2013-03-27 14
SkMTranscriptORF-1-25D_SPPrivate database2019-02-05 137
SprotA highly-annotated, curated protein sequence database. Minimal redundancy and high level of integration with other databases. Updated every 3 weeks. 2020-12-05
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266
Sprot_cowSubset of Sprot containing only cow sequences. 2020-10-10
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2
Sprot_humanSubset of Sprot containing only human sequences. 2020-10-10
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12
Sprot_LFLabPrivate database2016-03-22 13
Sprot_mouseSubset of Sprot containing only mouse sequences. 2020-10-10
Download fasta file
11
Sprot_mouse_pigSprot containing only mouse and pig sequences. 2020-10-11
Download fasta file
11
Sprot_pigSubset of Sprot containing only pig sequences. 2020-10-11
Download fasta file
0
Sprot_ratSubset of Sprot containing only rat sequences. 2020-10-11
Download fasta file
4
Sprot_varsplicftp://ftp.expasy.org/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz 2020-12-06
Download fasta file
27
Sprot_yeastSubset of Sprot containing only yeast (Saccharomyces cerevesiae, taxid 559292) sequences. 2020-10-11
Download fasta file
3
Tremblftp://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/complete/uniprot_trembl.fasta.gz 2020-12-06
Download fasta file
94463