| Name | Description | (MB) |
|
| Dpealeiiv2_final_with_ShakerIRgfp_061021_Tidy | Private database | 2023-11-22 | 13 |
| HomosapiensSP_cRAP | Private database | 2013-01-18 | 12 |
| Hs.Pf24.VSA.JR27 | Private database | 2017-03-03 | 27 |
| MSDB | A nonredundant protein sequence database designed specifically for mass-spec applications. | 2010-06-01 Download fasta file | 1290 |
| MusculusSP_cRAP | Private database | 2018-07-26 | 10 |
| NCBIprot_cow | Subset of NCBIprot containing only cow sequences, and without GI accession | 2024-02-19 Download fasta file | 58 |
| NCBIprot_human | Subset of NCBIprot containing only human sequences, and without GI accession | 2024-02-19 Download fasta file | 257 |
| NCBIprot_mouse | Subset of NCBIprot containing only mouse sequences, and without GI accession | 2024-02-19 Download fasta file | 112 |
| NCBIprot_pig | Subset of NCBIprot containing only pig sequences, and without GI accession | 2024-02-19 Download fasta file | 42 |
| NCBIprot_rat | Subset of NCBIprot containing only rat sequences, and without GI accession | 2024-02-19 Download fasta file | 66 |
| NPM_Contam_RM_Human | Private database | 2023-09-28 | 101 |
| PCF | Private database | 2024-11-13 | 0 |
| PCF_geve_aam_v1 | Private database | 2024-01-22 | 194 |
| PCF_SPHuman | Private database | 2024-02-14 | 13 |
| PCF_SprotMouse | Private database | 2024-02-14 | 11 |
| PCF_XL | Private database | 2023-05-23 | 0 |
| PCF_XL_YZ_2Pro | Private database | 2024-08-29 | 0 |
| PRIDE_Contaminants | A collection of common contaminant spectra from EBI. Updated weekly. | 2023-04-06 Download fasta file | 50 |
| Sprot | A highly-annotated, curated protein sequence database. Minimal redundancy and high level of integration with other databases. Updated every 3 weeks. | 2024-11-30 Download fasta file | 272 |
| Sprot_human | Subset of Sprot containing only human sequences. | 2025-01-04 Download fasta file | 13 |
| Sprot_human_2020_01 | Private database | 2023-12-28 | 12 |
| Sprot_mouse | Subset of Sprot containing only mouse sequences. | 2025-01-04 Download fasta file | 11 |
| Sprot_varsplic | Alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL. uniprot_sprot_varsplic.fasta.gz is downloaded from ftp://ftp.expasy.org/databases/uniprot/knowledgebase/ | 2024-12-01 Download fasta file | 28 |
| Squid_GFL | Private database | 2024-09-10 | 25 |
| Trembl | UniProtKB/TrEMBL contains high quality computationally analyzed records that are enriched with automatic annotation and classification. These UniProtKB/TrEMBL unreviewed entries are kept separated from the UniProtKB/Swiss-Prot manually reviewed entries so that the high quality data of the latter is not diluted in any way. Automatic processing of the data enables the records to be made available to the public quickly. uniprot_trembl.fasta.gz is downloaded from ftp://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/complete/ | 2024-12-02 Download fasta file | 118511 |
| uniprotkb_proteome_UP000000609_2024_05_14_CYY | Private database | 2024-05-15 | 1 |
| VANYA_Contam_TOXO_MOUSE | Private database | 2023-10-25 | 34 |
| VAR2CSA_Immunoglobulins | Private database | 2022-04-21 | 0 |