Biowulf High Performance Computing at the NIH
Mascot Databases

Name Description
Last update
Size
(MB)
20101108-IPI-HUMANPrivate database2010-11-17 95
Bindu_HbPrivate database2017-01-10 12
bsaPrivate database2012-09-06 0
CMD_PARPPrivate database2016-05-31 0
cotton_bollwormPrivate database2018-11-02 4
Hmn_Pfal2012Private database2017-05-02 19
HomosapiensSP_cRAPPrivate database2013-01-18 12
Hs.Pf24.VSA.JR27Private database2017-03-03 27
HS.PFA.17Dec2012Private database2012-12-20 18
HW-BACPrivate database2019-03-21 57
MSDBA nonredundant protein sequence database designed specifically for mass-spec applications. 2010-06-01
Download fasta file
1290
MusculusSP_cRAPPrivate database2018-07-26 10
Natasha_ncRNA_12142018Private database2018-12-14 0
NCBIprotThe equivalent of NCBInr, except without GI accession numbers. Updated monthly. 1969-12-31
Download fasta file
0
NCBIprot_cowSubset of NCBIprot containing only cow sequences, and without GI accession 2019-08-12
Download fasta file
50
NCBIprot_humanSubset of NCBIprot containing only human sequences, and without GI accession 2019-08-12
Download fasta file
226
NCBIprot_mouseSubset of NCBIprot containing only mouse sequences, and without GI accession 2019-08-12
Download fasta file
100
NCBIprot_pigSubset of NCBIprot containing only pig sequences, and without GI accession 2019-08-12
Download fasta file
40
NCBIprot_ratSubset of NCBIprot containing only rat sequences, and without GI accession 2019-08-12
Download fasta file
52
NEI_lncRNA_mousePrivate database2018-07-26 31
NHLBI_lncRNA_mousePrivate database2018-07-26 28
NPM_AllenPlace_2019-01-07Private database2019-01-08 0
NPM_DrosophilaPrivate database2018-07-26 27
NPM_MouseNPrivate database2018-07-26 44
NPM_OsS1PPrivate database2019-04-05 0
Orsburn7Private database2012-12-20 18
P16473Private database2017-11-03 0
PierceSixProPrivate database2019-05-21 0
PRIDE_ContaminantsA collection of common contaminant spectra from EBI. Updated weekly. 2018-07-19
Download fasta file
50
PRJNA388919PRICE_SPPrivate database2019-08-13 53
PRJNA388919_orfs_SprotPrivate database2019-07-08 62
PRJNA388919_SkM1-25D_SPPrivate database2019-07-18 62
projectSpecificDHdssoPrivate database2019-06-17 0
psfrefPrivate database2019-07-29 6
Psfref_OctopusPrivate database2017-07-07 31
psfref_SC-peptidePrivate database2017-05-01 0
Psfref_SquidPrivate database2017-07-07 6
psfref_tubPrivate database2019-06-18 0
Py_mouse_spPrivate database2013-03-27 14
SkMTranscriptORF-1-25D_SPPrivate database2019-02-05 137
SprotA highly-annotated, curated protein sequence database. Minimal redundancy and high level of integration with other databases. Updated every 3 weeks. 2019-08-03
Download fasta file
264
Sprot_cowSubset of Sprot containing only cow sequences. 2019-08-03
Download fasta file
2
Sprot_humanSubset of Sprot containing only human sequences. 2019-08-03
Download fasta file
13
Sprot_LFLabPrivate database2016-03-22 13
Sprot_mouseSubset of Sprot containing only mouse sequences. 2019-08-03
Download fasta file
10
Sprot_mouse_pigSprot containing only mouse and pig sequences. 2019-08-04
Download fasta file
11
Sprot_pigSubset of Sprot containing only pig sequences. 2019-08-04
Download fasta file
0
Sprot_ratSubset of Sprot containing only rat sequences. 2019-08-04
Download fasta file
4
Sprot_varsplicftp://ftp.expasy.org/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz 2019-08-04
Download fasta file
27
Sprot_yeastSubset of Sprot containing only yeast (Saccharomyces cerevesiae, taxid 559292) sequences. 2019-08-04
Download fasta file
3
Tremblftp://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/complete/uniprot_trembl.fasta.gz 2019-08-04
Download fasta file
74849