Scientific Reference Data
back to indexnf-core singularity images
Here includes several singularity images of nf-core pipelines. Eg. rnaseq, sarek Other pipelines are going to be added.
| Database Organization | [Not Available] |
| Database Website | https://nf-co.re/pipelines |
| Location | /fdb/nxf/singularity-images |
| Last Updated | 2025-02-20 |
| Related Application | nextflow |
| Update Schedule | quarterly |
398 Relevant Files
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| /fdb/nxf/singularity-images/community-cr-prod.seqera.io-docker-registry-v2-blobs-sha256-c2-c262fc09eca59edb5a724080eeceb00fb06396f510aefb229c2d2c6897e63975-data.img |
| /fdb/nxf/singularity-images/community-cr-prod.seqera.io-docker-registry-v2-blobs-sha256-f2-f2cb827988dca7067ff8096c37cb20bc841c878013da52ad47a50865d54efe83-data.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-community-cr-prod.seqera.io-docker-registry-v2-blobs-sha256-c2-c262fc09eca59edb5a724080eeceb00fb06396f510aefb229c2d2c6897e63975-data.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-community-cr-prod.seqera.io-docker-registry-v2-blobs-sha256-f2-f2cb827988dca7067ff8096c37cb20bc841c878013da52ad47a50865d54efe83-data.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-adapterremoval-2.3.2--hb7ba0dd_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-aria2-1.36.0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bbmap-39.10--h92535d8_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bcftools-1.17--haef29d1_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bcftools-1.20--h8b25389_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bioawk-1.0--hed695b0_5.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bioconductor-alevinqc-1.12.1--r41h9f5acd7_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bioconductor-dupradar-1.32.0--r43hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bioconductor-summarizedexperiment-1.32.0--r43hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bioconductor-tximeta%3A1.20.1--r43hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bowtie2-2.4.2--py38h1c8e9b9_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bracken-2.9--py38h2494328_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-busco-5.4.3--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bwa-0.7.18--he4a0461_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-bwa-mem2-2.2.1--he513fc3_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-cat-5.2.3--hdfd78af_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-centrifuge-1.0.4.1--hdcf5f25_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-centrifuge-1.0.4_beta--he513fc3_5.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-checkm-genome-1.2.3--pyhdfd78af_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-checkm2-1.0.2--pyh7cba7a3_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-chopper-0.9.0--hdcf5f25_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-cnvkit-0.9.10--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-cnvkit-0.9.11--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-concoct-1.1.0--py312h245ed52_6.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-control-freec-11.6--h1b792b2_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-control-freec-11.6b--hdbdd923_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-das_tool-1.1.6--r42hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-dragmap-1.2.1--h72d16da_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-ensembl-vep-113.0--pl5321h2a3209d_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-fastp-0.23.4--h5f740d0_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-fastqc-0.12.1--hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-fgbio-2.2.1--hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-filtlong-0.2.1--h9a82719_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-fq-0.12.0--h9ee0642_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-freebayes-1.3.6--hbfe0e7f_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gatk4-4.5.0.0--py36hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gatk4-spark-4.5.0.0--hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gawk-5.1.0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gawk-5.3.0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-genomad-1.5.2--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gffread-0.12.1--h8b12597_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gffread-0.12.7--hd03093a_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gffread-0.12.7--hdcf5f25_4.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-goleft-0.2.4--h9ee0642_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gtdbtk-2.4.0--pyhdfd78af_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gunc-1.0.5--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-gunc-1.0.6--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-hisat2-2.2.1--h1b792b2_3.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-htslib-1.20--h5efdd21_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-kallisto-0.51.1--heb0cbe2_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-kb-python-0.28.2--pyhdfd78af_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-kraken2-2.0.8_beta--pl526hc9558a2_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-krakentools-1.2--pyh5e36f6f_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-krona-2.7.1--pl526_5.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-krona-2.8--pl5262hdfd78af_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-lofreq-2.1.5--py38h588ecb2_4.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-manta-1.6.0--h9ee0642_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-maxbin2-2.2.7--he1b5a44_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-metabat2-2.15--h986a166_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-metaeuk-6.a5d39d9--pl5321hf1761c0_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mmseqs2-14.7e284--pl5321h6a68c12_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mosdepth-0.3.8--hd299d5a_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-msisensor-pro-1.2.0--hfc31af2_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-008daec56b7aaf3f162d7866758142b9f889d690-e8a286b2e789c091bac0a57302cdc78aa0112353-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-1021c2bc41756fa99bc402f461dad0d1c35358c1-b0c847e4fb89c343b04036e33b2daa19c4152cf5-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-19fa9f1a5c3966b63a24166365e81da35738c5ab-60ebac4ad9c6530c0d7bf6844f52ec6916e1e0b1-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2-59cdd445419f14abac76b31dd0d71217994cbcc9-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2-ded3841da0194af2701c780e9b3d653a85d27489-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-2e442ba7b07bfa102b9cf8fac6221263cd746ab8-57f05cfa73f769d6ed6d54144cb3aa2a6a6b17e0-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-375a758a4ca8c128fb9d38047a68a9f4322d2acd-b3615e06ef17566f2988a215ce9e10808c1d08bf-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-580d344d9d4a496cd403932da8765f9e0187774d-df80ed8d23d0a2c43181a2b3dd1b39f2d00fab5c-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-75e2a26f10cbf3629edf2d1600db3fed5ebe6e04-eae321284604f7dabbdf121e3070bda907b91266-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-780d630a9bb6a0ff2e7b6f730906fd703e40e98f-c94363856059151a2974dc501fb07a0360cc60a3-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-8706a1dd73c6cc426e12dd4dd33a5e917b3989ae-c8cbdc8ff4101e6745f8ede6eb5261ef98bdaff4-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-8849acf39a43cdd6c839a369a74c0adc823e2f91-ab110436faf952a33575c64dd74615a84011450b-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-a97e90b3b802d1da3d6958e0867610c718cb5eb1-2cdf6bf1e92acbeb9b2834b1c58754167173a410-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-ac74a7f02cebcfcc07d8e8d1d750af9c83b4d45a-577a697be67b5ae9b16f637fd723b8263a3898b3-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-c278c7398beb73294d78639a864352abef2931ce-ba3e6d2157eac2d38d22e62ec87675e12adb1010-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-cf0123ef83b3c38c13e3b0696a3f285d3f20f15b-64aad4a4e144878400649e71f42105311be7ed87-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-d14219255233ee6cacc427e28a7caf8ee42e8c91-0a22c7568e4a509925048454dad9ab37fa8fe776-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb-7cc3d06cbf42e28c5e2ebfc7c858654c7340a9d5-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-e25d1fa2bb6cbacd47a4f8b2308bd01ba38c5dd7-75310f02364a762e6ba5206fcd11d7529534ed6e-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-e5d375990341c5aef3c9aff74f96f66f65375ef6-2d15960ccea84e249a150b7f5d4db3a42fc2d6c3-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-mulled-v2-fe8faa35dbf6dc65a0f7f5d4ea12e31a79f73e40-1bd8542a8a0b42e0981337910954371d0230828e-0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-multiqc-1.25.1--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-multiqc-1.27--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-nanolyse-1.1.0--py36_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-nanolyse-1.2.0--py_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-nanoplot-1.41.6--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-nanoq-0.10.0--h031d066_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-ngscheckmate-1.0.1--py27pl5321r40hdfd78af_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-p7zip-16.02.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-pandas-1.4.3.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-perl-5.26.2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-picard-3.1.1--hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-pigz-2.3.4.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-porechop-0.2.4--py39h7cff6ad_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-porechop_abi-0.5.0--py310h590eda1_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-preseq-3.2.0--hdcf5f25_6.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-prokka%3A1.14.6--pl5321hdfd78af_4.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-pydamage-0.70--pyhdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-python-3.10.4.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-python-3.12.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-python-3.9--1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-qualimap-2.3--hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-quast-5.0.2--py37pl526hb5aa323_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-rseqc-5.0.3--py39hf95cd2a_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-salmon-1.10.3--h6dccd9a_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-samtools-1.17--h00cdaf9_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-samtools-1.20--h50ea8bc_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-samtools-1.21--h50ea8bc_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-seqtk-1.3--h5bf99c6_3.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-simpleaf-0.10.0--h9f5acd7_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-snpeff-5.1--hdfd78af_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-spades-4.0.0--h5fb382e_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-spring-1.1.1--h4ac6f70_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-star-2.7.10b--h9ee0642_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-strelka-2.9.10--h9ee0642_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-stringtie-2.2.3--h43eeafb_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-subread-2.0.6--he4a0461_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-tiara-1.0.3.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-tiddit-3.6.1--py38h24c8ff8_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-trim-galore%3A0.6.10--hdfd78af_1.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-ubuntu-20.04.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-ubuntu-22.04.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-ucsc-bedclip-377--h0b8a92a_2.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-ucsc-bedgraphtobigwig-469--h9b8f530_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-umi_tools-1.1.5--py39hf95cd2a_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-umicollapse-1.1.0--hdfd78af_0.img |
| /fdb/nxf/singularity-images/depot.galaxyproject.org-singularity-vcftools-0.1.16--he513fc3_4.img |
| /fdb/nxf/singularity-images/download.sh |
| /fdb/nxf/singularity-images/nxf_image.yml |
| /fdb/nxf/singularity-images/quay.io-community-cr-prod.seqera.io-docker-registry-v2-blobs-sha256-c2-c262fc09eca59edb5a724080eeceb00fb06396f510aefb229c2d2c6897e63975-data.img |
| /fdb/nxf/singularity-images/quay.io-community-cr-prod.seqera.io-docker-registry-v2-blobs-sha256-f2-f2cb827988dca7067ff8096c37cb20bc841c878013da52ad47a50865d54efe83-data.img |
| /fdb/nxf/singularity-images/quay.io-singularity-adapterremoval-2.3.2--hb7ba0dd_0.img |
| /fdb/nxf/singularity-images/quay.io-singularity-aria2-1.36.0.img |
| /fdb/nxf/singularity-images/quay.io-singularity-bbmap-39.10--h92535d8_0.img |
| /fdb/nxf/singularity-images/quay.io-singularity-bcftools-1.17--haef29d1_0.img |
| /fdb/nxf/singularity-images/quay.io-singularity-bcftools-1.20--h8b25389_0.img |
| /fdb/nxf/singularity-images/quay.io-singularity-bioawk-1.0--hed695b0_5.img |
| /fdb/nxf/singularity-images/quay.io-singularity-bioconductor-alevinqc-1.12.1--r41h9f5acd7_0.img |
| /fdb/nxf/singularity-images/quay.io-singularity-bioconductor-dupradar-1.32.0--r43hdfd78af_0.img |
| /fdb/nxf/singularity-images/quay.io-singularity-bioconductor-summarizedexperiment-1.32.0--r43hdfd78af_0.img |
| /fdb/nxf/singularity-images/quay.io-singularity-bioconductor-tximeta%3A1.20.1--r43hdfd78af_0.img |
| /fdb/nxf/singularity-images/quay.io-singularity-bowtie2-2.4.2--py38h1c8e9b9_1.img |
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