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UCSC danRer10 (gbdb)

The UCSC Genomics Institute maintains a broad collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data.

Database Organization UCSC Genomics Institute 
Database Website https://genome.ucsc.edu/
Location /fdb/genomebrowser/gbdb/danRer10
Last Updated 2026-09-29
Organism Danio rerio
Related Application ucsc
Update Schedule weekly

106 Relevant Files

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/fdb/genomebrowser/gbdb/danRer10/danRer10.2bit
/fdb/genomebrowser/gbdb/danRer10/trackDb.ix
/fdb/genomebrowser/gbdb/danRer10/trackDb.ixx
/fdb/genomebrowser/gbdb/danRer10/trackDb.offsets
/fdb/genomebrowser/gbdb/danRer10/trackDb.offsets.ixx
/fdb/genomebrowser/gbdb/danRer10/trackDb.txt
/fdb/genomebrowser/gbdb/danRer10/bbi/evaSnp.bb
/fdb/genomebrowser/gbdb/danRer10/bbi/evaSnp4.bb
/fdb/genomebrowser/gbdb/danRer10/bbi/evaSnp5.bb
/fdb/genomebrowser/gbdb/danRer10/bbi/evaSnp6.bb
/fdb/genomebrowser/gbdb/danRer10/bbi/evaSnp7.bb
/fdb/genomebrowser/gbdb/danRer10/bbi/evaSnp8.bb
/fdb/genomebrowser/gbdb/danRer10/bbi/gc5BaseBw/gc5Base.bw
/fdb/genomebrowser/gbdb/danRer10/bbi/grcIncidentDb/danRer10.grcIncidentDb.bb
/fdb/genomebrowser/gbdb/danRer10/crisprAll/crispr.bb
/fdb/genomebrowser/gbdb/danRer10/crisprAll/crisprDetails.tab
/fdb/genomebrowser/gbdb/danRer10/html/description.html
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToCalMil1.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToDanRer10.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToDanRer11.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToDanRer7.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToFr3.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToGCA_018400075.1.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToGalGal5.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToGalGal6.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToGasAcu1.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToHg19.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToHg38.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToLatCha1.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToMelGal5.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToMm10.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToOryLat2.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToRn6.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToTetNig2.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToXenTro7.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/liftOver/danRer10ToXenTro9.over.chain.gz
/fdb/genomebrowser/gbdb/danRer10/multiz12way/multiz12way.maf
/fdb/genomebrowser/gbdb/danRer10/multiz12way/phastCons12way.wib
/fdb/genomebrowser/gbdb/danRer10/multiz12way/phyloP12way.wib
/fdb/genomebrowser/gbdb/danRer10/ncbiRefSeq/ncbiRefSeqGenomicDiff.bb
/fdb/genomebrowser/gbdb/danRer10/ncbiRefSeq/ncbiRefSeqOther.bb
/fdb/genomebrowser/gbdb/danRer10/ncbiRefSeq/ncbiRefSeqOther.ix
/fdb/genomebrowser/gbdb/danRer10/ncbiRefSeq/ncbiRefSeqOther.ixx
/fdb/genomebrowser/gbdb/danRer10/ncbiRefSeq/ncbiRefSeqVersion.txt
/fdb/genomebrowser/gbdb/danRer10/ncbiRefSeq/seqNcbiRefSeq.rna.fa
/fdb/genomebrowser/gbdb/danRer10/quickLift/GCA_018400075.1.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/GCA_018400075.1.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/calMil1.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/calMil1.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/danRer10.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/danRer10.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/danRer11.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/danRer11.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/danRer7.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/danRer7.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/fr3.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/fr3.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/galGal5.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/galGal5.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/galGal6.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/galGal6.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/gasAcu1.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/gasAcu1.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/hg19.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/hg19.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/hg38.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/hg38.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/latCha1.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/latCha1.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/melGal5.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/melGal5.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/mm10.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/mm10.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/oryLat2.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/oryLat2.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/rn6.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/rn6.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/tetNig2.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/tetNig2.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/xenTro7.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/xenTro7.link.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/xenTro9.bb
/fdb/genomebrowser/gbdb/danRer10/quickLift/xenTro9.link.bb
/fdb/genomebrowser/gbdb/danRer10/transMap/V5/danRer10.ensembl.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/danRer10/transMap/V5/danRer10.est.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/danRer10/transMap/V5/danRer10.refseq.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/danRer10/transMap/V5/danRer10.rna.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipAliSwissprot.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipAliTrembl.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipChain.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipConflict.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipDisulfBond.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipDomain.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipFullSeq.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipInterest.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipLocCytopl.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipLocExtra.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipLocSignal.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipLocTransMemb.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipModif.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipMut.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipOther.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipRepeat.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipSplice.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/unipStruct.bb
/fdb/genomebrowser/gbdb/danRer10/uniprot/version.txt


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