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UCSC danRer11 (goldenPath)

The UCSC Genomics Institute maintains a broad collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data.

Database Organization UCSC Genomics Institute 
Database Website https://genome.ucsc.edu/
Location /fdb/genomebrowser/goldenPath/danRer11
Last Updated 2024-05-05
Organism Danio rerio
Related Application ucsc
Update Schedule weekly

151 Relevant Files

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/fdb/genomebrowser/goldenPath/danRer11/database/all_est.sql
/fdb/genomebrowser/goldenPath/danRer11/database/all_est.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/all_mrna.sql
/fdb/genomebrowser/goldenPath/danRer11/database/all_mrna.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/augustusGene.sql
/fdb/genomebrowser/goldenPath/danRer11/database/augustusGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/bigFiles.sql
/fdb/genomebrowser/goldenPath/danRer11/database/bigFiles.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chainGalGal6.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chainGalGal6.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chainGalGal6Link.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chainGalGal6Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chainHg38.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chainHg38.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chainHg38Link.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chainHg38Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chainMm10.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chainMm10.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chainMm10Link.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chainMm10Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chainMm39.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chainMm39.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chainMm39Link.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chainMm39Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chromAlias.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chromAlias.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/chromInfo.sql
/fdb/genomebrowser/goldenPath/danRer11/database/chromInfo.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/cpgIslandExt.sql
/fdb/genomebrowser/goldenPath/danRer11/database/cpgIslandExt.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/cpgIslandExtUnmasked.sql
/fdb/genomebrowser/goldenPath/danRer11/database/cpgIslandExtUnmasked.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/crisprAllTargets.sql
/fdb/genomebrowser/goldenPath/danRer11/database/crisprAllTargets.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/cytoBandIdeo.sql
/fdb/genomebrowser/goldenPath/danRer11/database/cytoBandIdeo.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ensGene.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ensGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ensGtp.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ensGtp.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ensPep.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ensPep.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ensemblLift.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ensemblLift.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ensemblSource.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ensemblSource.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ensemblToGeneName.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ensemblToGeneName.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/estOrientInfo.sql
/fdb/genomebrowser/goldenPath/danRer11/database/estOrientInfo.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/extNcbiRefSeq.sql
/fdb/genomebrowser/goldenPath/danRer11/database/extNcbiRefSeq.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/gap.sql
/fdb/genomebrowser/goldenPath/danRer11/database/gap.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/gbLoaded.sql
/fdb/genomebrowser/goldenPath/danRer11/database/gbLoaded.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/gc5BaseBw.sql
/fdb/genomebrowser/goldenPath/danRer11/database/gc5BaseBw.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/genscan.sql
/fdb/genomebrowser/goldenPath/danRer11/database/genscan.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/genscanSubopt.sql
/fdb/genomebrowser/goldenPath/danRer11/database/genscanSubopt.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/gold.sql
/fdb/genomebrowser/goldenPath/danRer11/database/gold.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/grcIncidentDb.sql
/fdb/genomebrowser/goldenPath/danRer11/database/grcIncidentDb.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/grp.sql
/fdb/genomebrowser/goldenPath/danRer11/database/grp.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/hgBlastTab.sql
/fdb/genomebrowser/goldenPath/danRer11/database/hgBlastTab.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/hgFindSpec.sql
/fdb/genomebrowser/goldenPath/danRer11/database/hgFindSpec.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/hgFindSpec_pushedout.sql
/fdb/genomebrowser/goldenPath/danRer11/database/hgFindSpec_pushedout.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/history.sql
/fdb/genomebrowser/goldenPath/danRer11/database/history.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/intronEst.sql
/fdb/genomebrowser/goldenPath/danRer11/database/intronEst.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/microsat.sql
/fdb/genomebrowser/goldenPath/danRer11/database/microsat.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/mmBlastTab.sql
/fdb/genomebrowser/goldenPath/danRer11/database/mmBlastTab.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/mrnaOrientInfo.sql
/fdb/genomebrowser/goldenPath/danRer11/database/mrnaOrientInfo.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeq.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeq.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqCds.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqCds.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqCurated.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqCurated.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqLink.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqLink.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqOther.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqOther.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqPepTable.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqPepTable.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqPredicted.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqPredicted.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqPsl.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ncbiRefSeqPsl.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/nestedRepeats.sql
/fdb/genomebrowser/goldenPath/danRer11/database/nestedRepeats.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/netGalGal6.sql
/fdb/genomebrowser/goldenPath/danRer11/database/netGalGal6.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/netHg38.sql
/fdb/genomebrowser/goldenPath/danRer11/database/netHg38.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/netMm10.sql
/fdb/genomebrowser/goldenPath/danRer11/database/netMm10.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/netMm39.sql
/fdb/genomebrowser/goldenPath/danRer11/database/netMm39.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/refFlat.sql
/fdb/genomebrowser/goldenPath/danRer11/database/refFlat.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/refGene.sql
/fdb/genomebrowser/goldenPath/danRer11/database/refGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/refSeqAli.sql
/fdb/genomebrowser/goldenPath/danRer11/database/refSeqAli.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/rmsk.sql
/fdb/genomebrowser/goldenPath/danRer11/database/rmsk.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/seqNcbiRefSeq.sql
/fdb/genomebrowser/goldenPath/danRer11/database/seqNcbiRefSeq.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/simpleRepeat.sql
/fdb/genomebrowser/goldenPath/danRer11/database/simpleRepeat.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/tableDescriptions.sql
/fdb/genomebrowser/goldenPath/danRer11/database/tableDescriptions.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/tableList.sql
/fdb/genomebrowser/goldenPath/danRer11/database/tableList.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/trackDb.sql
/fdb/genomebrowser/goldenPath/danRer11/database/trackDb.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/trackDb_pushedout.sql
/fdb/genomebrowser/goldenPath/danRer11/database/trackDb_pushedout.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ucscToEnsembl.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ucscToEnsembl.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ucscToINSDC.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ucscToINSDC.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/ucscToRefSeq.sql
/fdb/genomebrowser/goldenPath/danRer11/database/ucscToRefSeq.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/windowmaskerSdust.sql
/fdb/genomebrowser/goldenPath/danRer11/database/windowmaskerSdust.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/xenoMrna.sql
/fdb/genomebrowser/goldenPath/danRer11/database/xenoMrna.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/xenoRefFlat.sql
/fdb/genomebrowser/goldenPath/danRer11/database/xenoRefFlat.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/xenoRefGene.sql
/fdb/genomebrowser/goldenPath/danRer11/database/xenoRefGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/database/xenoRefSeqAli.sql
/fdb/genomebrowser/goldenPath/danRer11/database/xenoRefSeqAli.txt.gz
/fdb/genomebrowser/goldenPath/danRer11/liftOver/danRer11ToDanRer10.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer11/liftOver/danRer11ToDanRer7.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer11/liftOver/danRer11ToHg38.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer11/liftOver/danRer11ToMm10.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer11/liftOver/md5sum.txt

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