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UCSC danRer6 (goldenPath)

The UCSC Genomics Institute maintains a broad collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data.

Database Organization UCSC Genomics Institute 
Database Website https://genome.ucsc.edu/
Location /fdb/genomebrowser/goldenPath/danRer6
Last Updated 2023-06-18
Organism Danio rerio
Related Application ucsc
Update Schedule weekly

173 Relevant Files

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/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr1.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr10.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr11.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr12.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr13.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr14.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr15.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr16.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr17.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr18.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr19.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr2.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr20.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr21.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr22.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr23.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr24.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr25.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr3.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr4.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr5.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr6.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr7.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr8.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chr9.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/chrM.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/md5sum.txt
/fdb/genomebrowser/goldenPath/danRer6/chromosomes/unmappedScaffolds.fa.gz
/fdb/genomebrowser/goldenPath/danRer6/database/all_est.sql
/fdb/genomebrowser/goldenPath/danRer6/database/all_est.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/all_mrna.sql
/fdb/genomebrowser/goldenPath/danRer6/database/all_mrna.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/augustusGene.sql
/fdb/genomebrowser/goldenPath/danRer6/database/augustusGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/bigFiles.sql
/fdb/genomebrowser/goldenPath/danRer6/database/bigFiles.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/blastHg18KG.sql
/fdb/genomebrowser/goldenPath/danRer6/database/blastHg18KG.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainGasAcu1.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainGasAcu1.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainGasAcu1Link.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainGasAcu1Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainHg19.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainHg19.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainHg19Link.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainHg19Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainMm9.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainMm9.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainMm9Link.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainMm9Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainOryLat2.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainOryLat2.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainOryLat2Link.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainOryLat2Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainSelf.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainSelf.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainSelfLink.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainSelfLink.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainTetNig2.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainTetNig2.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainTetNig2Link.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainTetNig2Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainXenTro2.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainXenTro2.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chainXenTro2Link.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chainXenTro2Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/chromInfo.sql
/fdb/genomebrowser/goldenPath/danRer6/database/chromInfo.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/cpgIslandExt.sql
/fdb/genomebrowser/goldenPath/danRer6/database/cpgIslandExt.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/cpgIslandExtUnmasked.sql
/fdb/genomebrowser/goldenPath/danRer6/database/cpgIslandExtUnmasked.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/ensGene.sql
/fdb/genomebrowser/goldenPath/danRer6/database/ensGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/ensGtp.sql
/fdb/genomebrowser/goldenPath/danRer6/database/ensGtp.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/ensPep.sql
/fdb/genomebrowser/goldenPath/danRer6/database/ensPep.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/estOrientInfo.sql
/fdb/genomebrowser/goldenPath/danRer6/database/estOrientInfo.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/extFile.sql
/fdb/genomebrowser/goldenPath/danRer6/database/extFile.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/gap.sql
/fdb/genomebrowser/goldenPath/danRer6/database/gap.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/gbLoaded.sql
/fdb/genomebrowser/goldenPath/danRer6/database/gbLoaded.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/gc5Base.sql
/fdb/genomebrowser/goldenPath/danRer6/database/gc5Base.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/gold.sql
/fdb/genomebrowser/goldenPath/danRer6/database/gold.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/grp.sql
/fdb/genomebrowser/goldenPath/danRer6/database/grp.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/hgFindSpec.sql
/fdb/genomebrowser/goldenPath/danRer6/database/hgFindSpec.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/hgFindSpec_pushedout.sql
/fdb/genomebrowser/goldenPath/danRer6/database/hgFindSpec_pushedout.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/history.sql
/fdb/genomebrowser/goldenPath/danRer6/database/history.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/intronEst.sql
/fdb/genomebrowser/goldenPath/danRer6/database/intronEst.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/mgcFullMrna.sql
/fdb/genomebrowser/goldenPath/danRer6/database/mgcFullMrna.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/mgcGenes.sql
/fdb/genomebrowser/goldenPath/danRer6/database/mgcGenes.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/microsat.sql
/fdb/genomebrowser/goldenPath/danRer6/database/microsat.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/mrnaOrientInfo.sql
/fdb/genomebrowser/goldenPath/danRer6/database/mrnaOrientInfo.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/multiz6way.sql
/fdb/genomebrowser/goldenPath/danRer6/database/multiz6way.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/multiz6wayFrames.sql
/fdb/genomebrowser/goldenPath/danRer6/database/multiz6wayFrames.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/multiz6waySummary.sql
/fdb/genomebrowser/goldenPath/danRer6/database/multiz6waySummary.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/nestedRepeats.sql
/fdb/genomebrowser/goldenPath/danRer6/database/nestedRepeats.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/netGasAcu1.sql
/fdb/genomebrowser/goldenPath/danRer6/database/netGasAcu1.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/netHg19.sql
/fdb/genomebrowser/goldenPath/danRer6/database/netHg19.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/netMm9.sql
/fdb/genomebrowser/goldenPath/danRer6/database/netMm9.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/netOryLat2.sql
/fdb/genomebrowser/goldenPath/danRer6/database/netOryLat2.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/netTetNig2.sql
/fdb/genomebrowser/goldenPath/danRer6/database/netTetNig2.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/netXenTro2.sql
/fdb/genomebrowser/goldenPath/danRer6/database/netXenTro2.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/phastCons6way.sql
/fdb/genomebrowser/goldenPath/danRer6/database/phastCons6way.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/phastConsElements6way.sql
/fdb/genomebrowser/goldenPath/danRer6/database/phastConsElements6way.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/pubsBlat.sql
/fdb/genomebrowser/goldenPath/danRer6/database/pubsBlat.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/pubsBlatPsl.sql
/fdb/genomebrowser/goldenPath/danRer6/database/pubsBlatPsl.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/refFlat.sql
/fdb/genomebrowser/goldenPath/danRer6/database/refFlat.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/refGene.sql
/fdb/genomebrowser/goldenPath/danRer6/database/refGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/refSeqAli.sql
/fdb/genomebrowser/goldenPath/danRer6/database/refSeqAli.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/rmsk.sql
/fdb/genomebrowser/goldenPath/danRer6/database/rmsk.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/simpleRepeat.sql
/fdb/genomebrowser/goldenPath/danRer6/database/simpleRepeat.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/tRNAs.sql
/fdb/genomebrowser/goldenPath/danRer6/database/tRNAs.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/tableDescriptions.sql
/fdb/genomebrowser/goldenPath/danRer6/database/tableDescriptions.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/tableList.sql
/fdb/genomebrowser/goldenPath/danRer6/database/tableList.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/trackDb.sql
/fdb/genomebrowser/goldenPath/danRer6/database/trackDb.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/trackDb_pushedout.sql
/fdb/genomebrowser/goldenPath/danRer6/database/trackDb_pushedout.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/xenoMrna.sql
/fdb/genomebrowser/goldenPath/danRer6/database/xenoMrna.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/xenoRefFlat.sql
/fdb/genomebrowser/goldenPath/danRer6/database/xenoRefFlat.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/xenoRefGene.sql
/fdb/genomebrowser/goldenPath/danRer6/database/xenoRefGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/database/xenoRefSeqAli.sql
/fdb/genomebrowser/goldenPath/danRer6/database/xenoRefSeqAli.txt.gz
/fdb/genomebrowser/goldenPath/danRer6/liftOver/danRer6ToDanRer5.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer6/liftOver/danRer6ToDanRer7.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer6/liftOver/danRer6ToGasAcu1.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer6/liftOver/danRer6ToHg19.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer6/liftOver/danRer6ToMm9.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer6/liftOver/danRer6ToOryLat2.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer6/liftOver/danRer6ToTetNig2.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer6/liftOver/danRer6ToXenTro2.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer6/liftOver/md5sum.txt


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