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UCSC danRer7 (goldenPath)

The UCSC Genomics Institute maintains a broad collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data.

Database Organization UCSC Genomics Institute 
Database Website https://genome.ucsc.edu/
Location /fdb/genomebrowser/goldenPath/danRer7
Last Updated 2023-06-18
Organism Danio rerio
Related Application ucsc
Update Schedule weekly

211 Relevant Files

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/fdb/genomebrowser/goldenPath/danRer7/database/UMassInput.sql
/fdb/genomebrowser/goldenPath/danRer7/database/UMassInput.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME1.sql
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME1.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME1Hotspot.sql
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME1Hotspot.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME1Peak.sql
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME1Peak.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME3.sql
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME3.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME3Hotspot.sql
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME3Hotspot.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME3Peak.sql
/fdb/genomebrowser/goldenPath/danRer7/database/UMassME3Peak.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/all_est.sql
/fdb/genomebrowser/goldenPath/danRer7/database/all_est.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/all_mrna.sql
/fdb/genomebrowser/goldenPath/danRer7/database/all_mrna.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/augustusGene.sql
/fdb/genomebrowser/goldenPath/danRer7/database/augustusGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/bigFiles.sql
/fdb/genomebrowser/goldenPath/danRer7/database/bigFiles.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/blastHg18KG.sql
/fdb/genomebrowser/goldenPath/danRer7/database/blastHg18KG.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainFr3.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainFr3.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainFr3Link.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainFr3Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainGasAcu1.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainGasAcu1.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainGasAcu1Link.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainGasAcu1Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainHg19.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainHg19.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainHg19Link.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainHg19Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainMelGal1.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainMelGal1.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainMelGal1Link.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainMelGal1Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainMm10.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainMm10.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainMm10Link.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainMm10Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainOryLat2.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainOryLat2.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainOryLat2Link.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainOryLat2Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainPanTro3.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainPanTro3.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainPanTro3Link.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainPanTro3Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainTetNig2.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainTetNig2.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainTetNig2Link.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainTetNig2Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainXenTro3.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainXenTro3.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chainXenTro3Link.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chainXenTro3Link.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chromAlias.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chromAlias.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/chromInfo.sql
/fdb/genomebrowser/goldenPath/danRer7/database/chromInfo.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/cpgIslandExt.sql
/fdb/genomebrowser/goldenPath/danRer7/database/cpgIslandExt.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/cpgIslandExtUnmasked.sql
/fdb/genomebrowser/goldenPath/danRer7/database/cpgIslandExtUnmasked.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/crisprRanges.sql
/fdb/genomebrowser/goldenPath/danRer7/database/crisprRanges.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/crisprTargets.sql
/fdb/genomebrowser/goldenPath/danRer7/database/crisprTargets.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/ctgPos2.sql
/fdb/genomebrowser/goldenPath/danRer7/database/ctgPos2.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/cytoBandIdeo.sql
/fdb/genomebrowser/goldenPath/danRer7/database/cytoBandIdeo.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/ensGene.sql
/fdb/genomebrowser/goldenPath/danRer7/database/ensGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/ensGtp.sql
/fdb/genomebrowser/goldenPath/danRer7/database/ensGtp.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/ensPep.sql
/fdb/genomebrowser/goldenPath/danRer7/database/ensPep.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/ensemblSource.sql
/fdb/genomebrowser/goldenPath/danRer7/database/ensemblSource.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/ensemblToGeneName.sql
/fdb/genomebrowser/goldenPath/danRer7/database/ensemblToGeneName.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/estOrientInfo.sql
/fdb/genomebrowser/goldenPath/danRer7/database/estOrientInfo.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/extFile.sql
/fdb/genomebrowser/goldenPath/danRer7/database/extFile.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/gap.sql
/fdb/genomebrowser/goldenPath/danRer7/database/gap.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/gbLoaded.sql
/fdb/genomebrowser/goldenPath/danRer7/database/gbLoaded.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/gc5BaseBw.sql
/fdb/genomebrowser/goldenPath/danRer7/database/gc5BaseBw.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/genscan.sql
/fdb/genomebrowser/goldenPath/danRer7/database/genscan.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/gold.sql
/fdb/genomebrowser/goldenPath/danRer7/database/gold.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/grcIncidentDb.sql
/fdb/genomebrowser/goldenPath/danRer7/database/grcIncidentDb.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/grp.sql
/fdb/genomebrowser/goldenPath/danRer7/database/grp.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/hgFindSpec.sql
/fdb/genomebrowser/goldenPath/danRer7/database/hgFindSpec.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/hgFindSpec_pushedout.sql
/fdb/genomebrowser/goldenPath/danRer7/database/hgFindSpec_pushedout.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/history.sql
/fdb/genomebrowser/goldenPath/danRer7/database/history.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/intronEst.sql
/fdb/genomebrowser/goldenPath/danRer7/database/intronEst.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/locusName.sql
/fdb/genomebrowser/goldenPath/danRer7/database/locusName.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/mgcFullMrna.sql
/fdb/genomebrowser/goldenPath/danRer7/database/mgcFullMrna.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/mgcGenes.sql
/fdb/genomebrowser/goldenPath/danRer7/database/mgcGenes.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/microsat.sql
/fdb/genomebrowser/goldenPath/danRer7/database/microsat.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/mrnaOrientInfo.sql
/fdb/genomebrowser/goldenPath/danRer7/database/mrnaOrientInfo.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/multiz8way.sql
/fdb/genomebrowser/goldenPath/danRer7/database/multiz8way.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/multiz8wayFrames.sql
/fdb/genomebrowser/goldenPath/danRer7/database/multiz8wayFrames.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/multiz8waySummary.sql
/fdb/genomebrowser/goldenPath/danRer7/database/multiz8waySummary.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/nestedRepeats.sql
/fdb/genomebrowser/goldenPath/danRer7/database/nestedRepeats.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/netFr3.sql
/fdb/genomebrowser/goldenPath/danRer7/database/netFr3.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/netGasAcu1.sql
/fdb/genomebrowser/goldenPath/danRer7/database/netGasAcu1.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/netHg19.sql
/fdb/genomebrowser/goldenPath/danRer7/database/netHg19.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/netMelGal1.sql
/fdb/genomebrowser/goldenPath/danRer7/database/netMelGal1.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/netMm10.sql
/fdb/genomebrowser/goldenPath/danRer7/database/netMm10.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/netOryLat2.sql
/fdb/genomebrowser/goldenPath/danRer7/database/netOryLat2.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/netPanTro3.sql
/fdb/genomebrowser/goldenPath/danRer7/database/netPanTro3.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/netTetNig2.sql
/fdb/genomebrowser/goldenPath/danRer7/database/netTetNig2.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/netXenTro3.sql
/fdb/genomebrowser/goldenPath/danRer7/database/netXenTro3.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/phastCons8way.sql
/fdb/genomebrowser/goldenPath/danRer7/database/phastCons8way.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/phastCons8wayFish.sql
/fdb/genomebrowser/goldenPath/danRer7/database/phastCons8wayFish.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/phastConsElements8way.sql
/fdb/genomebrowser/goldenPath/danRer7/database/phastConsElements8way.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/phastConsElements8wayFish.sql
/fdb/genomebrowser/goldenPath/danRer7/database/phastConsElements8wayFish.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/phyloP8way.sql
/fdb/genomebrowser/goldenPath/danRer7/database/phyloP8way.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/phyloP8wayFish.sql
/fdb/genomebrowser/goldenPath/danRer7/database/phyloP8wayFish.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/pubsBingBlat.sql
/fdb/genomebrowser/goldenPath/danRer7/database/pubsBingBlat.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/pubsBingBlatPsl.sql
/fdb/genomebrowser/goldenPath/danRer7/database/pubsBingBlatPsl.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/refFlat.sql
/fdb/genomebrowser/goldenPath/danRer7/database/refFlat.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/refGene.sql
/fdb/genomebrowser/goldenPath/danRer7/database/refGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/refSeqAli.sql
/fdb/genomebrowser/goldenPath/danRer7/database/refSeqAli.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/rmsk.sql
/fdb/genomebrowser/goldenPath/danRer7/database/rmsk.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/simpleRepeat.sql
/fdb/genomebrowser/goldenPath/danRer7/database/simpleRepeat.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/tRNAs.sql
/fdb/genomebrowser/goldenPath/danRer7/database/tRNAs.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/tableDescriptions.sql
/fdb/genomebrowser/goldenPath/danRer7/database/tableDescriptions.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/tableList.sql
/fdb/genomebrowser/goldenPath/danRer7/database/tableList.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/trackDb.sql
/fdb/genomebrowser/goldenPath/danRer7/database/trackDb.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/trackDb_pushedout.sql
/fdb/genomebrowser/goldenPath/danRer7/database/trackDb_pushedout.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/ucscToINSDC.sql
/fdb/genomebrowser/goldenPath/danRer7/database/ucscToINSDC.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/ucscToRefSeq.sql
/fdb/genomebrowser/goldenPath/danRer7/database/ucscToRefSeq.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/xenoMrna.sql
/fdb/genomebrowser/goldenPath/danRer7/database/xenoMrna.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/xenoRefFlat.sql
/fdb/genomebrowser/goldenPath/danRer7/database/xenoRefFlat.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/xenoRefGene.sql
/fdb/genomebrowser/goldenPath/danRer7/database/xenoRefGene.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/database/xenoRefSeqAli.sql
/fdb/genomebrowser/goldenPath/danRer7/database/xenoRefSeqAli.txt.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToDanRer10.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToDanRer6.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToFr2.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToFr3.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToGasAcu1.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToHg19.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToMelGal1.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToMm10.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToMm9.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToOryLat2.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToPanTro3.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToTetNig2.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToXenTro2.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/danRer7ToXenTro3.over.chain.gz
/fdb/genomebrowser/goldenPath/danRer7/liftOver/md5sum.txt


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