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UCSC mm39 (gbdb)

The UCSC Genomics Institute maintains a broad collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data.

Database Organization UCSC Genomics Institute 
Database Website https://genome.ucsc.edu/
Location /fdb/genomebrowser/gbdb/mm39
Last Updated 2023-06-13
Organism Mus musculus
Related Application ucsc
Update Schedule weekly

158 Relevant Files

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/fdb/genomebrowser/gbdb/mm39/knownGene.ix
/fdb/genomebrowser/gbdb/mm39/knownGene.ixx
/fdb/genomebrowser/gbdb/mm39/knownGeneFastVM27.ix
/fdb/genomebrowser/gbdb/mm39/knownGeneFastVM27.ixx
/fdb/genomebrowser/gbdb/mm39/knownGeneFastVM30.ix
/fdb/genomebrowser/gbdb/mm39/knownGeneFastVM30.ixx
/fdb/genomebrowser/gbdb/mm39/knownGeneFastVM32.ix
/fdb/genomebrowser/gbdb/mm39/knownGeneFastVM32.ixx
/fdb/genomebrowser/gbdb/mm39/mm39.2bit
/fdb/genomebrowser/gbdb/mm39/trackDb.ix
/fdb/genomebrowser/gbdb/mm39/trackDb.ixx
/fdb/genomebrowser/gbdb/mm39/trackDb.offsets
/fdb/genomebrowser/gbdb/mm39/trackDb.offsets.ixx
/fdb/genomebrowser/gbdb/mm39/trackDb.txt
/fdb/genomebrowser/gbdb/mm39/TOGAvHg38v1/HLTOGAannotVsHg38v1.bb
/fdb/genomebrowser/gbdb/mm39/TOGAvHg38v1/HLTOGAannotVsHg38v1.ix
/fdb/genomebrowser/gbdb/mm39/TOGAvHg38v1/HLTOGAannotVsHg38v1.ixx
/fdb/genomebrowser/gbdb/mm39/bbi/evaSnp.bb
/fdb/genomebrowser/gbdb/mm39/bbi/evaSnp4.bb
/fdb/genomebrowser/gbdb/mm39/bbi/chainNet/chainGCF_003668045.3.bb
/fdb/genomebrowser/gbdb/mm39/bbi/chainNet/chainGCF_003668045.3Link.bb
/fdb/genomebrowser/gbdb/mm39/bbi/chainNet/mm39.GCF_003668045.3.net.bb
/fdb/genomebrowser/gbdb/mm39/bbi/chainNet/mm39.GCF_003668045.3.net.summary.bb
/fdb/genomebrowser/gbdb/mm39/bbi/gc5BaseBw/gc5Base.bw
/fdb/genomebrowser/gbdb/mm39/bbi/grcIncidentDb/Mm39.grcIncidentDb.bb
/fdb/genomebrowser/gbdb/mm39/crisprAll/crispr.bb
/fdb/genomebrowser/gbdb/mm39/crisprAll/crisprDetails.tab
/fdb/genomebrowser/gbdb/mm39/gencode/gencodeVM27.bb
/fdb/genomebrowser/gbdb/mm39/gencode/gencodeVM30.bb
/fdb/genomebrowser/gbdb/mm39/gencode/gencodeVM32.bb
/fdb/genomebrowser/gbdb/mm39/html/description.html
/fdb/genomebrowser/gbdb/mm39/jaspar/JASPAR2022.bb
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToBosTau9.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToCalJac4.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToCanFam5.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToCanFam6.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToCavPor3.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToDanRer11.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToEchTel2.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToEquCab3.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToEriEur2.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToGCF_003121395.1.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToGalGal6.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToGalVar1.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToGorGor6.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToHg38.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToHs1.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToLoxAfr3.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToManPen1.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToMm10.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToMonDom5.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToNeoSch1.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToOchPri3.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToOryCun2.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToOtoGar3.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToOviAri4.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToPanPan3.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToPanTro6.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToPetMar3.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToRheMac10.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToRn6.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToRn7.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToSorAra2.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToSpeTri2.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToSusScr3.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToTarSyr2.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToTupBel1.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToTurTru2.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToXenTro10.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/liftOver/mm39ToXenTro9.over.chain.gz
/fdb/genomebrowser/gbdb/mm39/multiz35way/phastCons35way.wib
/fdb/genomebrowser/gbdb/mm39/multiz35way/phyloP35way.wib
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr10.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr11.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr12.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr13.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr14.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr15.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr16.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr17.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr18.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr19.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr1_GL456210v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr1_GL456211v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr1_GL456212v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr1_GL456221v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr1_GL456239v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr1_MU069434v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr2.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr3.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr4.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr5.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr5_GL456354v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr5_JH584296v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr5_JH584297v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr5_JH584298v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr5_JH584299v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr6.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr7.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr7_GL456219v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr8.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chr9.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrM.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456359v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456360v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456366v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456367v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456370v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456372v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456378v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456379v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456381v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456382v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456385v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456387v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456392v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_GL456394v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrUn_JH584304v1.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrX.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrX_GL456233v2_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrY.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrY_JH584300v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrY_JH584301v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrY_JH584302v1_random.maf
/fdb/genomebrowser/gbdb/mm39/multiz35way/maf/chrY_JH584303v1_random.maf
/fdb/genomebrowser/gbdb/mm39/ncbiRefSeq/ncbiRefSeqGenomicDiff.bb
/fdb/genomebrowser/gbdb/mm39/ncbiRefSeq/ncbiRefSeqOther.bb
/fdb/genomebrowser/gbdb/mm39/ncbiRefSeq/ncbiRefSeqOther.ix
/fdb/genomebrowser/gbdb/mm39/ncbiRefSeq/ncbiRefSeqOther.ixx
/fdb/genomebrowser/gbdb/mm39/ncbiRefSeq/ncbiRefSeqVersion.txt
/fdb/genomebrowser/gbdb/mm39/ncbiRefSeq/seqNcbiRefSeq.rna.fa
/fdb/genomebrowser/gbdb/mm39/reMap/reMap2022.bb
/fdb/genomebrowser/gbdb/mm39/reMap/reMapDensity2022.bw
/fdb/genomebrowser/gbdb/mm39/targetDb/mm39KgSeq13.2bit
/fdb/genomebrowser/gbdb/mm39/targetDb/mm39KgSeqVM30.2bit
/fdb/genomebrowser/gbdb/mm39/targetDb/mm39KgSeqVM32.2bit
/fdb/genomebrowser/gbdb/mm39/uniprot/unipAliSwissprot.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipAliTrembl.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipChain.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipConflict.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipDisulfBond.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipDomain.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipFullSeq.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipInterest.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipLocCytopl.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipLocExtra.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipLocSignal.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipLocTransMemb.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipModif.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipMut.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipOther.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipRepeat.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipSplice.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/unipStruct.bb
/fdb/genomebrowser/gbdb/mm39/uniprot/version.txt
/fdb/genomebrowser/gbdb/mm39/xenoRefGene/mm39.xenoRefGene.bb
/fdb/genomebrowser/gbdb/mm39/xenoRefGene/mm39.xenoRefGene.ix


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