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UCSC rn5 (goldenPath)

The UCSC Genomics Institute maintains a broad collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data.

Database Organization UCSC Genomics Institute 
Database Website https://genome.ucsc.edu/
Location /fdb/genomebrowser/goldenPath/rn5
Last Updated 2023-06-18
Organism Rattus norvegicus
Related Application ucsc
Update Schedule weekly

150 Relevant Files

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/fdb/genomebrowser/goldenPath/rn5/database/all_est.sql
/fdb/genomebrowser/goldenPath/rn5/database/all_est.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/all_mrna.sql
/fdb/genomebrowser/goldenPath/rn5/database/all_mrna.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/augustusGene.sql
/fdb/genomebrowser/goldenPath/rn5/database/augustusGene.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/bigFiles.sql
/fdb/genomebrowser/goldenPath/rn5/database/bigFiles.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/chainMm10.sql
/fdb/genomebrowser/goldenPath/rn5/database/chainMm10.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/chainMm10Link.sql
/fdb/genomebrowser/goldenPath/rn5/database/chainMm10Link.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/chainPanTro4.sql
/fdb/genomebrowser/goldenPath/rn5/database/chainPanTro4.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/chainPanTro4Link.sql
/fdb/genomebrowser/goldenPath/rn5/database/chainPanTro4Link.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/chainRheMac3.sql
/fdb/genomebrowser/goldenPath/rn5/database/chainRheMac3.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/chainRheMac3Link.sql
/fdb/genomebrowser/goldenPath/rn5/database/chainRheMac3Link.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/chromAlias.sql
/fdb/genomebrowser/goldenPath/rn5/database/chromAlias.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/chromInfo.sql
/fdb/genomebrowser/goldenPath/rn5/database/chromInfo.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/cpgIslandExt.sql
/fdb/genomebrowser/goldenPath/rn5/database/cpgIslandExt.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/cpgIslandExtUnmasked.sql
/fdb/genomebrowser/goldenPath/rn5/database/cpgIslandExtUnmasked.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/crisprRanges.sql
/fdb/genomebrowser/goldenPath/rn5/database/crisprRanges.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/crisprTargets.sql
/fdb/genomebrowser/goldenPath/rn5/database/crisprTargets.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/cytoBand.sql
/fdb/genomebrowser/goldenPath/rn5/database/cytoBand.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/cytoBandIdeo.sql
/fdb/genomebrowser/goldenPath/rn5/database/cytoBandIdeo.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/ensGene.sql
/fdb/genomebrowser/goldenPath/rn5/database/ensGene.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/ensGtp.sql
/fdb/genomebrowser/goldenPath/rn5/database/ensGtp.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/ensPep.sql
/fdb/genomebrowser/goldenPath/rn5/database/ensPep.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/ensemblSource.sql
/fdb/genomebrowser/goldenPath/rn5/database/ensemblSource.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/ensemblToGeneName.sql
/fdb/genomebrowser/goldenPath/rn5/database/ensemblToGeneName.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/estOrientInfo.sql
/fdb/genomebrowser/goldenPath/rn5/database/estOrientInfo.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/extFile.sql
/fdb/genomebrowser/goldenPath/rn5/database/extFile.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/gap.sql
/fdb/genomebrowser/goldenPath/rn5/database/gap.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/gbLoaded.sql
/fdb/genomebrowser/goldenPath/rn5/database/gbLoaded.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/gc5BaseBw.sql
/fdb/genomebrowser/goldenPath/rn5/database/gc5BaseBw.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/genscan.sql
/fdb/genomebrowser/goldenPath/rn5/database/genscan.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/genscanSubopt.sql
/fdb/genomebrowser/goldenPath/rn5/database/genscanSubopt.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/gold.sql
/fdb/genomebrowser/goldenPath/rn5/database/gold.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/grp.sql
/fdb/genomebrowser/goldenPath/rn5/database/grp.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/hgFindSpec.sql
/fdb/genomebrowser/goldenPath/rn5/database/hgFindSpec.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/hgFindSpec_pushedout.sql
/fdb/genomebrowser/goldenPath/rn5/database/hgFindSpec_pushedout.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/history.sql
/fdb/genomebrowser/goldenPath/rn5/database/history.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/intronEst.sql
/fdb/genomebrowser/goldenPath/rn5/database/intronEst.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/locusName.sql
/fdb/genomebrowser/goldenPath/rn5/database/locusName.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/mgcFullMrna.sql
/fdb/genomebrowser/goldenPath/rn5/database/mgcFullMrna.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/mgcGenes.sql
/fdb/genomebrowser/goldenPath/rn5/database/mgcGenes.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/microsat.sql
/fdb/genomebrowser/goldenPath/rn5/database/microsat.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/mrnaOrientInfo.sql
/fdb/genomebrowser/goldenPath/rn5/database/mrnaOrientInfo.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/multiz13way.sql
/fdb/genomebrowser/goldenPath/rn5/database/multiz13way.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/multiz13wayFrames.sql
/fdb/genomebrowser/goldenPath/rn5/database/multiz13wayFrames.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/multiz13waySummary.sql
/fdb/genomebrowser/goldenPath/rn5/database/multiz13waySummary.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/nestedRepeats.sql
/fdb/genomebrowser/goldenPath/rn5/database/nestedRepeats.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/netMm10.sql
/fdb/genomebrowser/goldenPath/rn5/database/netMm10.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/netPanTro4.sql
/fdb/genomebrowser/goldenPath/rn5/database/netPanTro4.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/netRheMac3.sql
/fdb/genomebrowser/goldenPath/rn5/database/netRheMac3.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/phastCons13way.sql
/fdb/genomebrowser/goldenPath/rn5/database/phastCons13way.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/phastConsElements13way.sql
/fdb/genomebrowser/goldenPath/rn5/database/phastConsElements13way.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/phyloP13way.sql
/fdb/genomebrowser/goldenPath/rn5/database/phyloP13way.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/refFlat.sql
/fdb/genomebrowser/goldenPath/rn5/database/refFlat.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/refGene.sql
/fdb/genomebrowser/goldenPath/rn5/database/refGene.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/refSeqAli.sql
/fdb/genomebrowser/goldenPath/rn5/database/refSeqAli.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/rmsk.sql
/fdb/genomebrowser/goldenPath/rn5/database/rmsk.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/simpleRepeat.sql
/fdb/genomebrowser/goldenPath/rn5/database/simpleRepeat.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/tableDescriptions.sql
/fdb/genomebrowser/goldenPath/rn5/database/tableDescriptions.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/tableList.sql
/fdb/genomebrowser/goldenPath/rn5/database/tableList.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/trackDb.sql
/fdb/genomebrowser/goldenPath/rn5/database/trackDb.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/trackDb_pushedout.sql
/fdb/genomebrowser/goldenPath/rn5/database/trackDb_pushedout.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/ucscToINSDC.sql
/fdb/genomebrowser/goldenPath/rn5/database/ucscToINSDC.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/windowmaskerSdust.sql
/fdb/genomebrowser/goldenPath/rn5/database/windowmaskerSdust.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/xenoMrna.sql
/fdb/genomebrowser/goldenPath/rn5/database/xenoMrna.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/xenoRefFlat.sql
/fdb/genomebrowser/goldenPath/rn5/database/xenoRefFlat.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/xenoRefGene.sql
/fdb/genomebrowser/goldenPath/rn5/database/xenoRefGene.txt.gz
/fdb/genomebrowser/goldenPath/rn5/database/xenoRefSeqAli.sql
/fdb/genomebrowser/goldenPath/rn5/database/xenoRefSeqAli.txt.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/md5sum.txt
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToAilMel1.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToBosTau7.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToCanFam3.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToCavPor3.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToDanRer7.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToGalGal4.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToHg19.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToHg38.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToMelGal1.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToMm10.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToMm9.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToMonDom5.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToPanTro4.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToRheMac3.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToRn4.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToRn6.over.chain.gz
/fdb/genomebrowser/goldenPath/rn5/liftOver/rn5ToXenTro3.over.chain.gz


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