Scientific Reference Data
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Pan_troglodytes iGenome Data

iGenomes reference sequence and annotation data for Pan troglodytes sourced from NCBI, UCSC, and Ensembl, including builds panTro[2,3,4] and CHIMP2.1

Database Organization Illumina 
Database Website https://support.illumina.com/sequencing/sequencing_software/igenome.html
Location /fdb/igenomes/Pan_troglodytes
Last Updated 2015-07-21
Organism Pan troglodytes
Update Schedule NA

745 Relevant Files

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/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/ChromInfo.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/DATE.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/Pan_troglodytes.CHIMP2.1.59.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/refFlat.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/refGene.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_34/exon_coords.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_34/splice_sites-34.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_34/splice_sites-34.fa.2bpb
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_34/splice_sites-34.fa.idx
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_34/splice_sites-34.fa.vld
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_49/exon_coords.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_49/splice_sites-49.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_49/splice_sites-49.fa.2bpb
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_49/splice_sites-49.fa.idx
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2010-09-27-18-50-31/splice_sites_49/splice_sites-49.fa.vld
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-01-27-17-20-06/Genes/ChromInfo.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-01-27-17-20-06/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-01-27-17-20-06/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-01-27-17-20-06/Genes/refGene.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-01-27-17-20-06/SmallRNA/hairpin.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-01-27-17-20-06/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-08-30-20-50-44/Genes/ChromInfo.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-08-30-20-50-44/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-08-30-20-50-44/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-08-30-20-50-44/Genes/refGene.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-08-30-20-50-44/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2011-08-30-20-50-44/SmallRNA/precursor.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2012-03-08-21-37-58/Genes/ChromInfo.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2012-03-08-21-37-58/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2012-03-08-21-37-58/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2012-03-08-21-37-58/Genes/refGene.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2012-03-08-21-37-58/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2012-03-08-21-37-58/SmallRNA/precursor.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2013-03-06-10-21-06/Genes/ChromInfo.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2013-03-06-10-21-06/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2013-03-06-10-21-06/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2013-03-06-10-21-06/Genes/refGene.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2013-03-06-10-21-06/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2013-03-06-10-21-06/SmallRNA/precursor.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2014-05-23-16-05-40/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2014-05-23-16-05-40/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2014-05-23-16-05-40/SmallRNA/hairpin.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2014-05-23-16-05-40/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2015-07-17-14-34-11/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2015-07-17-14-34-11/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2015-07-17-14-34-11/SmallRNA/hairpin.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Annotation/Archives/archive-2015-07-17-14-34-11/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/AbundantSequences/MT.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/AbundantSequences/adapter_contam1.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/AbundantSequences/phix.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/AbundantSequences/polyA.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/AbundantSequences/polyC.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/genome.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/genome.fa.amb
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/genome.fa.ann
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/genome.fa.bwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/genome.fa.pac
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/genome.fa.sa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.5.x/genome.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.5.x/genome.fa.amb
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.5.x/genome.fa.ann
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.5.x/genome.fa.bwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.5.x/genome.fa.pac
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.5.x/genome.fa.rbwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.5.x/genome.fa.rpac
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.5.x/genome.fa.rsa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.5.x/genome.fa.sa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.6.0/genome.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.6.0/genome.fa.amb
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.6.0/genome.fa.ann
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.6.0/genome.fa.bwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.6.0/genome.fa.pac
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BWAIndex/version0.6.0/genome.fa.sa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Bowtie2Index/genome.1.bt2
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Bowtie2Index/genome.2.bt2
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Bowtie2Index/genome.3.bt2
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Bowtie2Index/genome.4.bt2
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Bowtie2Index/genome.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Bowtie2Index/genome.rev.1.bt2
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Bowtie2Index/genome.rev.2.bt2
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BowtieIndex/genome.1.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BowtieIndex/genome.2.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BowtieIndex/genome.3.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BowtieIndex/genome.4.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BowtieIndex/genome.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BowtieIndex/genome.rev.1.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/BowtieIndex/genome.rev.2.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/1.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/10.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/11.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/12.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/13.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/14.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/15.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/16.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/17.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/18.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/19.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/20.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/21.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/22.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/2a.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/2b.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/3.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/4.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/5.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/6.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/7.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/8.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/9.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/MT.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/X.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/Chromosomes/Y.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/WholeGenomeFasta/GenomeSize.xml
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/WholeGenomeFasta/genome.dict
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/WholeGenomeFasta/genome.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1/Sequence/WholeGenomeFasta/genome.fa.fai
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2012-03-08-19-42-45/Genes/ChromInfo.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2012-03-08-19-42-45/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2012-03-08-19-42-45/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2012-03-08-19-42-45/Genes/refGene.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2012-03-08-19-42-45/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2012-03-08-19-42-45/SmallRNA/precursor.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2013-03-06-10-19-20/Genes/ChromInfo.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2013-03-06-10-19-20/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2013-03-06-10-19-20/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2013-03-06-10-19-20/Genes/refGene.txt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2013-03-06-10-19-20/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2013-03-06-10-19-20/SmallRNA/precursor.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2014-05-23-16-05-40/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2014-05-23-16-05-40/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2014-05-23-16-05-40/SmallRNA/hairpin.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2014-05-23-16-05-40/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2015-07-17-14-34-11/Genes/genes.gtf
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2015-07-17-14-34-11/Genes/refFlat.txt.gz
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2015-07-17-14-34-11/SmallRNA/hairpin.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Annotation/Archives/archive-2015-07-17-14-34-11/SmallRNA/mature.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/AbundantSequences/adapter_contam1.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/AbundantSequences/phix.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/AbundantSequences/polyA.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/AbundantSequences/polyC.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/BWAIndex/genome.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/BWAIndex/genome.fa.amb
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/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/Bowtie2Index/genome.rev.1.bt2
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/Bowtie2Index/genome.rev.2.bt2
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/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/BowtieIndex/genome.3.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/BowtieIndex/genome.4.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/BowtieIndex/genome.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/BowtieIndex/genome.rev.1.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/BowtieIndex/genome.rev.2.ebwt
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/Chromosomes/1.fa
/fdb/igenomes/Pan_troglodytes/Ensembl/CHIMP2.1.4/Sequence/Chromosomes/10.fa
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