Scientific Reference Data
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Zea mays iGenome Data

iGenomes reference sequence and annotation data for Zea mays sourced from Ensembl builds AGPv2 and AGPv3

Database Organization Illumina 
Database Website https://support.illumina.com/sequencing/sequencing_software/igenome.html
Location /fdb/igenomes/Zea_mays
Last Updated 2016-03-03
Organism Zea mays
Update Schedule NA

168 Relevant Files

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/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-01-27-17-23-15/Genes/ChromInfo.txt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-01-27-17-23-15/Genes/genes.gtf
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-01-27-17-23-15/Genes/genes.gtf.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-01-27-17-23-15/Genes/refFlat.txt.gz
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-01-27-17-23-15/Genes/refFlat.txt.gz.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-01-27-17-23-15/Genes/refGene.txt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-01-27-17-23-15/SmallRNA/hairpin.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-01-27-17-23-15/SmallRNA/mature.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-08-30-20-54-58/Genes/ChromInfo.txt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-08-30-20-54-58/Genes/genes.gtf
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-08-30-20-54-58/Genes/genes.gtf.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-08-30-20-54-58/Genes/refFlat.txt.gz
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-08-30-20-54-58/Genes/refFlat.txt.gz.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-08-30-20-54-58/Genes/refGene.txt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-08-30-20-54-58/SmallRNA/mature.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2011-08-30-20-54-58/SmallRNA/precursor.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2012-03-08-21-41-28/Genes/ChromInfo.txt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2012-03-08-21-41-28/Genes/genes.gtf
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2012-03-08-21-41-28/Genes/genes.gtf.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2012-03-08-21-41-28/Genes/refFlat.txt.gz
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2012-03-08-21-41-28/Genes/refFlat.txt.gz.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2012-03-08-21-41-28/Genes/refGene.txt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2012-03-08-21-41-28/SmallRNA/mature.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2012-03-08-21-41-28/SmallRNA/precursor.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2013-03-06-10-23-28/Genes/ChromInfo.txt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2013-03-06-10-23-28/Genes/genes.gtf
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2013-03-06-10-23-28/Genes/genes.gtf.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2013-03-06-10-23-28/Genes/refFlat.txt.gz
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2013-03-06-10-23-28/Genes/refFlat.txt.gz.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2013-03-06-10-23-28/Genes/refGene.txt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2013-03-06-10-23-28/SmallRNA/mature.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2013-03-06-10-23-28/SmallRNA/precursor.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2014-05-23-16-08-35/Genes/genes.gtf
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2014-05-23-16-08-35/Genes/genes.gtf.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2014-05-23-16-08-35/Genes/refFlat.txt.gz
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2014-05-23-16-08-35/Genes/refFlat.txt.gz.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2014-05-23-16-08-35/SmallRNA/hairpin.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2014-05-23-16-08-35/SmallRNA/mature.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2015-07-17-14-37-55/Genes/genes.gtf
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2015-07-17-14-37-55/Genes/genes.gtf.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2015-07-17-14-37-55/Genes/refFlat.txt.gz
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2015-07-17-14-37-55/Genes/refFlat.txt.gz.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2015-07-17-14-37-55/SmallRNA/hairpin.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Annotation/Archives/archive-2015-07-17-14-37-55/SmallRNA/mature.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/AbundantSequences/MT.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/AbundantSequences/adapter_contam1.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/AbundantSequences/phix.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/AbundantSequences/polyA.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/AbundantSequences/polyC.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/genome.fa.amb
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/genome.fa.ann
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/genome.fa.bwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/genome.fa.pac
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/genome.fa.sa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.5.x/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.5.x/genome.fa.amb
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.5.x/genome.fa.ann
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.5.x/genome.fa.bwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.5.x/genome.fa.pac
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.5.x/genome.fa.rbwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.5.x/genome.fa.rpac
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.5.x/genome.fa.rsa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.5.x/genome.fa.sa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.6.0/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.6.0/genome.fa.amb
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.6.0/genome.fa.ann
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.6.0/genome.fa.bwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.6.0/genome.fa.pac
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BWAIndex/version0.6.0/genome.fa.sa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Bowtie2Index/genome.1.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Bowtie2Index/genome.2.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Bowtie2Index/genome.3.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Bowtie2Index/genome.4.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Bowtie2Index/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Bowtie2Index/genome.rev.1.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Bowtie2Index/genome.rev.2.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BowtieIndex/genome.1.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BowtieIndex/genome.2.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BowtieIndex/genome.3.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BowtieIndex/genome.4.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BowtieIndex/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BowtieIndex/genome.rev.1.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/BowtieIndex/genome.rev.2.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/1.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/10.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/2.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/3.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/4.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/5.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/6.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/7.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/8.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/9.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/MT.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/Chromosomes/chloroplast.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/WholeGenomeFasta/GenomeSize.xml
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/WholeGenomeFasta/genome.dict
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/WholeGenomeFasta/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv2/Sequence/WholeGenomeFasta/genome.fa.fai
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2014-05-28-11-10-58/Genes/genes.gtf
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2014-05-28-11-10-58/Genes/genes.gtf.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2014-05-28-11-10-58/Genes/refFlat.txt.gz
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2014-05-28-11-10-58/Genes/refFlat.txt.gz.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2014-05-28-11-10-58/SmallRNA/hairpin.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2014-05-28-11-10-58/SmallRNA/mature.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2015-07-17-14-38-10/Genes/genes.gtf
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2015-07-17-14-38-10/Genes/genes.gtf.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2015-07-17-14-38-10/Genes/refFlat.txt.gz
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2015-07-17-14-38-10/Genes/refFlat.txt.gz.bak
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2015-07-17-14-38-10/SmallRNA/hairpin.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Annotation/Archives/archive-2015-07-17-14-38-10/SmallRNA/mature.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/AbundantSequences/MT.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/AbundantSequences/adapter_contam1.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/AbundantSequences/phix.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/AbundantSequences/polyA.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/AbundantSequences/polyC.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/genome.fa.amb
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/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/genome.fa.bwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/genome.fa.pac
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/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.5.x/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.5.x/genome.fa.amb
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.5.x/genome.fa.ann
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.5.x/genome.fa.bwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.5.x/genome.fa.pac
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.5.x/genome.fa.rbwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.5.x/genome.fa.rpac
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.5.x/genome.fa.rsa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.5.x/genome.fa.sa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.6.0/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.6.0/genome.fa.amb
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/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BWAIndex/version0.6.0/genome.fa.sa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Bowtie2Index/genome.1.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Bowtie2Index/genome.2.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Bowtie2Index/genome.3.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Bowtie2Index/genome.4.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Bowtie2Index/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Bowtie2Index/genome.rev.1.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Bowtie2Index/genome.rev.2.bt2
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BowtieIndex/genome.1.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BowtieIndex/genome.2.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BowtieIndex/genome.3.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BowtieIndex/genome.4.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BowtieIndex/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BowtieIndex/genome.rev.1.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/BowtieIndex/genome.rev.2.ebwt
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/1.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/10.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/2.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/3.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/4.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/5.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/6.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/7.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/8.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/9.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/MT.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/Chromosomes/Pt.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/WholeGenomeFasta/GenomeSize.xml
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/WholeGenomeFasta/genome.dict
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/WholeGenomeFasta/genome.fa
/fdb/igenomes/Zea_mays/Ensembl/AGPv3/Sequence/WholeGenomeFasta/genome.fa.fai

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