HPC @ NIH

	HPC @ NIH High-Performance Computing at the NIH	Search:

The NIH HPC group plans, manages and supports high-performance computing systems specifically for the intramural NIH community. These systems include Biowulf, a 90,000+ processor Linux cluster; Helix, an interactive system for short jobs, Sciware, a set of applications for desktops, and Helixweb, which provides a number of web-based scientific tools. We provide access to a wide range of computational applications for genomics, molecular and structural biology, mathematical and graphical analysis, image analysis, and other scientific fields.

Quick Links

Cluster Utilization

Tuesday, October 17th, 2017

Last 24 hrs
86,298 jobs submitted 60,595 jobs completed 2,571,787 CPU hrs used	20 NIH Institutes 157 Principal Investigators 282 users

Announcements

(All)

NIH Biowulf - Maintenance Window Concluded (Oct 11th 2017)
Walk-In Consult with HPC staff Wed 18 Oct (Oct 11th 2017)
REMINDER: NIH Biowulf Phase 2 and Phase 3 nodes unavailable Oct 8-10 (Oct 6th 2017)
NIH Biowulf Phase 2 and Phase 3 nodes unavailable Oct 8-10 (Oct 2nd 2017)
Changes to Slurm memory limit enforcement on Biowulf (Sep 26th 2017)
NIH Biowulf Phase 3 nodes going offline for emergency remediation (Sep 22nd 2017)
NIH Data Science Week - Containerization Workshop and Roundtable (Sep 18th 2017)

Recent Papers that used Biowulf & HPC Resources

(All publications)

Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains
Murray, DT; Kato, M; Lin, Y et al.
Cell , DOI://10.1016/j.cell.2017.08.048 (2017)

Evaluation and comparison of predictive individual-level general surrogates
Erin E. Gabriel, Michael C. Sachs, M. Elizabeth Halloran
Biostatistics , doi://10.1093/biostatistics/kxx037 (2017)

Piecewise Polynomial Approximations To The Icrp 116 Effective Dose Coefficients: Photons And Neutrons
M. M. Mille N. E. Hertel P. M. Bergstrom C. Lee
Radiation Protection Dosimetry , doi://10.1093/rpd/ncx112 (2017)

Estimating onset time from longitudinal and cross-sectional data with an application to estimating gestational age from longitudinal maternal anthropometry during pregnancy and neonatal anthropometry at birth
Ana Maria Ortega-Villa, Katherine L. Grantz, Paul S. Albert
J. Roy. Stat. Soc. , DOI: 10.1111/rssa.12312 (2017)

Mechanisms of recognition of Aβ monomer, oligomer, and fibril by homologous antibodies
Zhao, J; Nussinov, R; Ma, B;
J. Biol. Chem. , DOI://10.1074/jbc.M117.801514 (2017)

Topological structure determination of RNA using small angle X-ray scattering
Bhandari, YR; Fan, L; Fang, X et al.
J. Mol. Biol. , DOI://10.1016/j.jmb.2017.09.006 (2017)

Direct comparison of performance of single nucleotide variant calling in human genome with alignment-based and assembly-based approaches
Wu, L; Yavas, G; Hong, H; Tong, W; Xiao, W;
Sci Rep , DOI://10.1038/s41598-017-10826-9 (2017)

Temporal interpolation alters motion in fMRI scans: Magnitudes and consequences for artifact detection
Power, JD; Plitt, M; Kundu, P; Bandettini, PA; Martin, A;
PLoS ONE , DOI://10.1371/journal.pone.0182939 (2017)