COVID-19 Research Support
66.5+ Million CPU hours used
1.5+ Million jobs run
Sample projects (All projects):
- Cryo-electron microscopy of virus proteins and complexes [NCI_CCR]
- Metagenomics of Covid-19 family [NLM]
- Covid-19 transmission modeling and crossover trials. Developing models for flow cytometry data that will be used to gain insights into cellular immune responses to COVID-19
[NIAID]
- (1) Identification of drugs that can be repurposed for COVID-19
(2) Using genetic interactions like synthetic lethality and genome scale metabolic modeling to identify new drug targets and combination therapy for COVID-19 [NCI]
- Modeling unreported SARS-Cov2 infection from observed cases, computational modeling of Covid-19 biological systems. [NIDDK]
- Transcriptomics and network analysis of SARS-CoV-2 infection [NHLBI]
- Studying maturation of the SARS Cov2 main protease [NIDDK]
Biowulf users with COVID-related projects should contact the HPC staff to get increased priority for their jobs.
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Biowulf Utilization
Sunday, June 13th, 2021
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Last 24 hrs
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80,712 jobs submitted
46,085 jobs completed
3,301,122 CPU hrs used
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21 NIH Institutes
153 Principal Investigators
264 users
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Announcements
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Recent Papers that used Biowulf & HPC Resources
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Pathogenic Germline Variants in Cancer Susceptibility Genes in Children and Young Adults With Rhabdomyosarcoma
Kim, J; Light, N; Subasri, V et al.
JCO Precis Oncol
, DOI://10.1200/PO.20.00218 (2021)
Impact of Conditioning Intensity and Genomics on Relapse After Allogeneic Transplantation for Patients With Myelodysplastic Syndrome
Dillon, LW; Gui, G; Logan, BR et al.
JCO Precis Oncol
, DOI://10.1200/PO.20.00355 (2021)
Automated picking of amyloid fibrils from cryo-EM images for helical reconstruction with RELION
Thurber, KR; Yin, Y; Tycko, R; ,
J Struct Biol
, DOI://10.1016/j.jsb.2021.107736 (2021)
Comparative Transcriptomic Analysis of the Hematopoietic System between Human and Mouse by Single Cell RNA Sequencing
Gao, S; Wu, Z; Kannan, J et al.
Cells
, DOI://10.3390/cells10050973 (2021)
A replica exchange umbrella sampling (REUS) approach to predict host-guest binding free energies in SAMPL8 challenge
Ghorbani, M; Hudson, PS; Jones, MR et al.
J Comput Aided Mol Des
, DOI://10.1007/s10822-021-00385-7 (2021)
Bridged parametric survival models: General paradigm and speed improvements
Swihart, BJ; Bandyopadhyay, D; ,
Comput Methods Programs Biomed
, DOI://10.1016/j.cmpb.2021.106115 (2021)
Lack of transgenerational effects of ionizing radiation exposure from the Chernobyl accident
Yeager, M; Machiela, MJ; Kothiyal, P et al.
Science
, DOI://10.1126/science.abg2365 (2021)
COVID-19-CT-CXR: A Freely Accessible and Weakly Labeled Chest X-Ray and CT Image Collection on COVID-19 From Biomedical Literature
Peng, Y; Tang, Y; Lee, S et al.
IEEE Trans Big Data
, DOI://10.1109/tbdata.2020.3035935 (2021)
Severity modeling of propionic acidemia using clinical and laboratory biomarkers
Shchelochkov, OA; Manoli, I; Juneau, P et al.
Genet Med
, DOI://10.1038/s41436-021-01173-2 (2021)
Small RNAs are modified with N-glycans and displayed on the surface of living cells
Flynn, RA; Pedram, K; Malaker, SA et al.
Cell
, DOI://10.1016/j.cell.2021.04.023 (2021)
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