GAMESS on Biowulf
The General Atomic and Molecular Electronic Structure System (GAMESS) is a general ab initio quantum chemistry package. GAMESS is maintained by the members of the Gordon research group at Iowa State University.
References:
- M.W.Schmidt, K.K.Baldridge, J.A.Boatz, S.T.Elbert, M.S.Gordon, J.H.Jensen, S.Koseki, N.Matsunaga, K.A.Nguyen, S.J.Su, T.L.Windus, M.Dupuis, J.A.Montgomery General Atomic and Molecular Electronic Structure System J. Comput. Chem. 14, 1347-1363 (1993).
Documentation
Important Notes
- Module Name: GAMESS (see the modules page for more information)
- Multithreaded
- environment variables set
- GAMESS_HOME
- Example files in $GAMESS_HOME/tests
The arguments to the rungms command are:
rungms inp [version] [nprocs]
where,
- inp - input file name (.inp extension assumed)
- version - GAMESS version number (optional, defaults to system default which is always 00)
- nprocs - total number of processes to run (optional, defaults to 1)
Interactive job
Interactive jobs should be used for debugging, graphics, or applications that cannot be run as batch jobs.
Allocate an interactive session and run the program. Sample session:
[user@biowulf]$ sinteractive --cpus-per-task=16 --mem-per-cpu=1024 salloc.exe: Pending job allocation 46116226 salloc.exe: job 46116226 queued and waiting for resources salloc.exe: job 46116226 has been allocated resources salloc.exe: Granted job allocation 46116226 salloc.exe: Waiting for resource configuration salloc.exe: Nodes cn3144 are ready for job [user@cn3144 ~]$ module load GAMESS [user@cn3144 ~]$ rungms mystuff 00 16 [user@cn3144 ~]$ exit salloc.exe: Relinquishing job allocation 46116226 [user@biowulf ~]$
Batch job
Most jobs should be run as batch jobs.
Create a batch input file (e.g. GAMESS.sh). For example:
#!/bin/bash module load GAMESS rungms scf_44 00 $SLURM_CPUS_PER_TASK
Submit this job using the Slurm sbatch command.
sbatch [--cpus-per-task=#] [--mem=#] GAMESS.sh