CRYOLO on Biowulf
CRYOLO is a fast and accurate particle picking procedure based on convolutional neural networks.
References:
- SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM. Communications Biology 2, Wagner, T. et al. (2019).
Documentation
Important Notes
- Module Name: cryolo (see the modules page for more information)
Interactive job
Interactive jobs should be used for debugging, graphics, or applications that cannot be run as batch jobs.
Allocate an interactive session and run the program.
Sample session (user input in bold):
[user@biowulf]$ sinteractive salloc.exe: Pending job allocation 46116226 salloc.exe: job 46116226 queued and waiting for resources salloc.exe: job 46116226 has been allocated resources salloc.exe: Granted job allocation 46116226 salloc.exe: Waiting for resource configuration salloc.exe: Nodes cn3144 are ready for job [user@cn3144 ~]$ module load cryolo [+] Loading cryolo 1.5.3 [user@cn3144 ~]$ cryolo_gui.py &The above should display the Graphical User Interface of cryolo