MitoSuite on Biowulf
MitoSuite is a graphical tool for human mitochondrial genome profiling in massively parallel sequencing.
References:
- Ishiya K, Ueda S. (2017) MitoSuite: a graphical tool for human mitochondrial genome profiling in massive parallel sequencing. PeerJ 5:e3406.
Documentation
Important Notes
- Module Name: mitosuite (see the modules page for more information)
- Example files in /fdb/mitosuite
Interactive job
Interactive jobs should be used for debugging, graphics, or applications that cannot be run as batch jobs.
Because MitoSuite is a graphical application, make sure to use X11-forwarding or NoMachine when connecting to the login node.
Allocate an interactive session and run the program.
Sample session (user input in bold):
[user@biowulf]$ sinteractive salloc.exe: Pending job allocation 46116226 salloc.exe: job 46116226 queued and waiting for resources salloc.exe: job 46116226 has been allocated resources salloc.exe: Granted job allocation 46116226 salloc.exe: Waiting for resource configuration salloc.exe: Nodes cn3144 are ready for job [user@cn3144 ~]$ module load mitosuite [user@cn3144 ~]$ mitosuite (mitosuite window opens -- follow example in the guide at mitosuite.com) [user@cn3144 ~]$ exit salloc.exe: Relinquishing job allocation 46116226 [user@biowulf ~]$