UCSF pyem is a collection of Python modules and command-line utilities for electron microscopy of biological samples.

References:

• Asarnow, D., Palovcak, E., Cheng, Y. UCSF pyem v0.5. (Zenodo:2019)

• UCSF pyem Main Site

• Module Name: pyem (see the modules page for more information)
• singlethreaded

Allocate an interactive session and run the program.
Sample session (user input in bold):

[user@biowulf]$ sinteractive
salloc.exe: Pending job allocation 46116226
salloc.exe: job 46116226 queued and waiting for resources
salloc.exe: job 46116226 has been allocated resources
salloc.exe: Granted job allocation 46116226
salloc.exe: Waiting for resource configuration
salloc.exe: Nodes cn3144 are ready for job

[user@cn3144 ~]$ module load pyem

[user@cn3144 ~]$ star.py

[user@cn3144 ~]$ exit
salloc.exe: Relinquishing job allocation 46116226
[user@biowulf ~]$