The Seven Bridges CLI, or SB CLI, lets users access a Seven Bridges platform using the API from the command line. The interface allows users to configure an API endpoint along with a corresponding authentication token. Use these credentials users can access a variety of information like their projects, tasks, and files, which can be downloaded or uploaded.

• Seven Bridges CLI Command Reference

• Module Name: sb_cli (see the modules page for more information)
• The module can be loaded on Helix or on compute nodes with, for example, an sinteractive session

Allocate an interactive session and run the program. The module is also available on Helix.
Sample session (user input in bold):

[user@biowulf]$ sinteractive
salloc.exe: Pending job allocation 46116226
salloc.exe: job 46116226 queued and waiting for resources
salloc.exe: job 46116226 has been allocated resources
salloc.exe: Granted job allocation 46116226
salloc.exe: Waiting for resource configuration
salloc.exe: Nodes cn3144 are ready for job

[user@cn3144 ~]$ module load sb_cli
[+] Loading sb_cli 0.18.4  ...

[user@cn3144 ~]$ sb configure
Seven Bridges API endpoint: https://cgc-api.sbgenomics.com
Seven Bridges authorization token: ****************
Seven Bridges advance access (true/false): false

[user@cn3144 ~]$ sb --output table files list \
                    --project username/test-project \
                    --origin 1c46ecb3-772d-46b4-88db-6b423e75e811
+--------------------------+-------------------------------+
|            ID            |             Name              |
+--------------------------+-------------------------------+
| 61d5f311e722267a17c521f6 | G20502.22Rv1.2_fastqc.b64html |
+--------------------------+-------------------------------+
| 61d5f2f9e722267a17c521b3 | G20502.22Rv1.2_fastqc.zip     |
+--------------------------+-------------------------------+

[user@cn3144 ~]$ sb download --file 61d5f311e722267a17c521f6
Downloading file `G20502.22Rv1.2_fastqc.b64html` with ID `61d5f311e722267a17c521f6`.
  479.40 KiB / 479.40 KiB ┃▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓┃100.00% 1.70 MiB/s 0s
'success'   '61d5f311e722267a17c521f6'      'G20502.22Rv1.2_fastqc.b64html` '490910'

[user@cn3144 ~]$ exit
salloc.exe: Relinquishing job allocation 46116226
[user@biowulf ~]$